NC_029850.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_029850.1 Coriandrum sativum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 146519
Tables: 1
This is table 1 of 1 ( 60 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
444--470 13 2.1 13 100 0 54 14 14 0 70 1.17
7439--7481 21 2.1 21 91 4 70 20 0 4 74 1.00
8367--8406 21 1.9 21 85 10 55 42 5 0 52 1.23
14121--14163 20 2.2 20 82 0 50 44 11 18 25 1.84
19323--19419 49 2.0 49 89 0 149 29 17 20 31 1.96
26356--26384 14 2.1 14 100 0 58 34 0 6 58 1.25
29051--29080 14 2.1 14 100 0 60 36 20 13 30 1.90
30265--30313 20 2.5 20 80 6 55 61 0 2 36 1.08
46015--46062 13 3.8 13 83 10 64 39 8 2 50 1.44
46022--46049 11 2.5 11 100 0 56 39 7 0 53 1.28
46015--46062 24 2.0 24 91 0 78 39 8 2 50 1.44
46639--46704 27 2.4 28 80 7 73 33 3 3 60 1.27
48030--48055 6 4.3 6 100 0 52 30 0 53 15 1.42
51556--51599 22 2.0 22 100 0 88 40 9 18 31 1.81
58805--58879 35 2.1 35 92 0 132 50 10 10 28 1.70
61576--61602 14 1.9 14 100 0 54 40 14 7 37 1.74
63121--63153 16 2.1 16 100 0 66 30 0 6 63 1.18
63842--63887 23 2.0 23 100 0 92 17 8 8 65 1.45
67566--67606 21 2.0 21 90 0 64 26 26 12 34 1.92
73844--73880 19 1.9 19 94 0 65 54 13 8 24 1.66
81378--81411 14 2.4 14 90 5 50 38 2 2 55 1.30
88014--88081 21 3.2 21 77 8 75 11 22 8 57 1.61
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
89192--89235 15 2.9 15 93 0 70 27 34 13 25 1.93
90452--90527 18 4.2 18 91 0 116 26 5 28 39 1.78
90452--90504 9 5.9 9 76 8 54 30 3 26 39 1.74
90459--90535 36 2.1 36 85 0 100 27 7 27 37 1.84
100617--101136 14 37.4 14 75 18 457 61 1 9 27 1.34
100593--101136 49 11.2 48 80 13 450 61 1 9 27 1.35
100823--100870 22 2.2 22 96 0 87 68 0 2 29 1.01
100593--101186 106 5.8 102 76 14 407 61 1 10 27 1.36
100957--101002 22 2.1 22 95 0 83 60 0 17 21 1.35
100997--101038 22 1.9 22 100 0 84 66 0 14 19 1.25
101117--101158 22 1.9 22 95 0 75 64 0 14 21 1.29
101534--101584 18 2.8 18 100 0 102 35 9 15 39 1.81
101568--101674 45 2.4 45 100 0 214 33 18 22 25 1.97
101658--102155 18 25.9 18 81 13 559 33 13 17 35 1.89
101676--102113 117 3.8 117 90 7 671 33 13 17 35 1.89
102028--102155 42 3.4 36 91 7 184 35 12 15 36 1.85
102285--102411 42 3.0 42 100 0 254 47 18 11 22 1.81
102369--102890 54 9.7 54 93 0 855 37 24 19 18 1.94
103409--103433 8 3.1 8 100 0 50 0 0 36 64 0.94
105965--106005 20 2.0 20 100 0 82 51 14 29 4 1.63
110633--110698 32 2.1 32 97 0 123 40 24 9 25 1.84
118117--118174 24 2.2 24 82 11 62 50 5 8 36 1.56
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
135054--135119 32 2.1 32 97 0 123 25 9 24 40 1.84
139747--139787 20 2.0 20 100 0 82 4 29 14 51 1.63
142319--142343 8 3.1 8 100 0 50 64 36 0 0 0.94
142862--143383 54 9.7 54 92 2 843 18 19 24 37 1.94
143341--143467 42 3.0 42 100 0 254 22 11 18 47 1.81
143597--144094 18 25.9 18 81 13 559 35 17 13 33 1.89
143639--144076 117 3.8 117 90 7 671 35 17 13 33 1.89
144078--144184 45 2.4 45 100 0 214 25 22 18 33 1.97
144168--144218 18 2.8 18 100 0 102 39 15 9 35 1.81
144586--145135 14 36.0 14 75 18 336 27 9 1 62 1.34
144594--144635 22 1.9 22 95 0 75 21 14 0 64 1.29
144616--145135 28 18.7 28 75 18 457 27 9 1 61 1.34
144714--144755 22 1.9 22 100 0 84 19 14 0 66 1.25
144616--145136 120 4.3 119 81 11 612 27 9 1 61 1.34
144827--144893 21 3.5 20 73 26 74 28 11 4 55 1.56
144772--145159 49 7.9 49 83 10 348 28 9 1 60 1.38
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Tables: 1
The End!