NC_029889.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_029889.1 Carum carvi chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  155449

    Tables:   1   

    This is table  1  of  1  ( 21 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  21339--21435                       49       2.0      49          87        0         140     30   16   20   31   1.95

  28380--28406                       14       1.9      14          100       0         54      33   0    7    59   1.25

  43233--43268                       18       2.0      18          100       0         72      50   0    11   38   1.38

  47346--47380                       11       2.8      13          83        16        56      37   8    0    54   1.31

  47374--47413                       20       2.0      20          100       0         80      50   5    10   35   1.58

  48000--48078                       23       3.4      23          96        1         131     30   5    0    64   1.15

  60085--60111                       13       2.1      13          100       0         54      22   14   14   48   1.81

  74839--74875                       19       1.9      19          100       0         74      54   16   8    21   1.68

  74826--74854                       12       2.4      12          100       0         58      44   24   6    24   1.77

  89008--89074                       21       3.2      20          77        6         71      11   22   8    56   1.63

  89004--89066                       20       3.0      21          76        4         74      12   22   9    55   1.65

  90182--90225                       15       2.9      15          93        0         70      27   34   13   25   1.93

  91442--91507                       18       3.7      18          95        0         114     28   6    30   34   1.81

  107309--107374                     32       2.1      32          97        0         123     40   24   9    25   1.84

  118537--118573                     12       3.1      12          96        0         65      48   0    10   40   1.38

  126019--126054                     18       2.0      18          100       0         72      27   5    16   50   1.68

  131748--131813                     32       2.1      32          97        0         123     25   9    24   40   1.84

  147615--147680                     18       3.7      18          95        0         114     34   30   6    28   1.81

  148897--148940                     15       2.9      15          93        0         70      25   13   34   27   1.93

  150049--150115                     20       3.3      20          75        4         71      55   8    23   11   1.64

  150066--150118                     20       2.6      21          81        6         72      58   11   20   9    1.60
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!