NC_029943.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_029943.1 Epimedium koreanum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157218
Tables: 1
This is table 1 of 1 ( 34 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5--35 11 2.7 12 90 10 55 64 0 22 12 1.27
7460--7637 87 2.0 87 100 0 356 35 12 6 44 1.69
30208--30239 15 2.1 15 94 0 55 21 12 15 50 1.77
41871--41901 15 2.1 15 100 0 62 12 25 38 22 1.90
74814--74964 48 2.9 53 78 13 168 29 17 15 37 1.91
74867--74964 48 2.0 48 96 0 178 31 20 14 33 1.92
82575--82621 24 2.0 24 86 0 67 25 36 14 23 1.93
89881--89927 13 3.5 14 88 8 55 61 8 10 19 1.53
89893--89927 13 2.6 13 95 4 61 62 5 11 20 1.48
90260--90326 33 2.0 33 88 0 98 31 17 29 20 1.96
92632--92725 27 3.4 27 85 8 143 35 6 25 32 1.81
95298--95345 9 5.3 9 89 0 69 33 0 35 31 1.58
95294--95345 18 2.9 18 82 0 77 34 0 34 30 1.58
95294--95346 27 2.0 27 96 0 97 33 0 33 32 1.58
111575--111605 15 2.1 15 100 0 62 61 0 32 6 1.21
114232--114267 15 2.4 15 95 0 63 55 5 19 19 1.62
114437--114491 12 4.6 12 93 0 83 45 12 34 7 1.70
114499--114637 66 2.1 67 91 4 226 43 18 20 17 1.89
114602--114677 24 3.2 24 62 14 57 44 15 22 17 1.86
114592--114685 48 2.0 48 93 0 161 44 17 20 18 1.87
131064--131102 18 2.2 18 86 9 53 35 12 7 43 1.72
132094--132187 48 2.0 48 93 0 161 18 20 17 44 1.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
132142--132280 66 2.1 67 91 4 226 17 20 18 43 1.89
132288--132342 12 4.6 12 93 0 83 7 34 12 45 1.70
132512--132547 15 2.4 15 95 0 63 19 19 5 55 1.62
132585--132661 33 2.3 33 84 4 93 24 24 7 42 1.81
135174--135204 15 2.1 15 100 0 62 6 32 0 61 1.21
151438--151485 9 5.3 9 89 0 69 29 35 0 35 1.58
151433--151485 27 2.0 27 96 0 97 32 33 0 33 1.58
151434--151485 18 2.9 18 82 0 77 30 34 0 34 1.58
154054--154147 27 3.4 27 85 8 143 32 25 6 35 1.81
156453--156519 33 2.0 33 88 0 98 20 29 17 31 1.96
156852--156886 13 2.6 13 95 4 61 20 11 5 62 1.48
156852--156912 13 4.5 13 80 13 52 21 11 6 60 1.53
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!