NC_029953.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_029953.1 Serenoa repens plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158952
Tables: 1
This is table 1 of 1 ( 84 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3901--3930 15 2.0 15 100 0 60 53 0 0 46 1.00
3909--3956 20 2.5 21 83 16 68 58 0 0 41 0.98
5566--5607 20 2.1 20 100 0 84 54 7 14 23 1.64
8543--8588 14 3.2 14 81 3 56 28 6 0 65 1.17
8626--8663 19 2.0 19 100 0 76 57 0 0 42 0.98
8682--8738 20 2.6 22 79 20 75 70 0 8 21 1.14
8683--8737 22 2.6 21 88 11 78 69 0 9 21 1.16
8693--8769 12 6.1 13 73 17 65 66 0 9 24 1.21
8690--8771 15 5.3 15 76 20 80 65 0 8 25 1.20
15685--15709 12 2.1 12 100 0 50 32 8 0 60 1.26
16546--16601 28 2.0 28 96 0 103 30 10 0 58 1.32
16696--16725 15 2.0 15 100 0 60 26 13 20 40 1.89
27809--27851 17 2.6 17 74 3 52 48 0 16 34 1.46
29680--29788 2 57.0 2 71 12 77 47 0 0 50 1.13
29705--29760 25 2.5 21 76 20 67 50 0 0 50 1.00
30044--30103 16 3.6 17 88 6 88 40 6 6 46 1.56
30031--30109 16 5.1 16 85 10 76 44 5 6 44 1.51
32255--32297 12 3.9 12 77 22 58 44 16 11 27 1.82
32247--32294 20 2.4 20 100 0 96 45 14 8 31 1.74
32831--32862 15 2.1 15 100 0 64 43 6 12 37 1.68
36138--36180 21 2.0 21 95 0 77 37 16 9 37 1.81
37082--37115 12 2.8 12 100 0 68 32 0 23 44 1.54
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
37777--37802 13 2.0 13 100 0 52 38 7 0 53 1.30
45788--45819 16 2.0 16 100 0 64 31 25 6 37 1.81
47146--47176 14 2.2 14 94 0 53 35 9 0 54 1.33
47239--47268 15 2.0 15 100 0 60 33 6 6 53 1.53
47369--47409 21 2.0 21 95 0 73 34 4 0 60 1.18
47447--47494 23 2.1 23 96 0 87 45 0 4 50 1.21
47547--47578 16 2.0 16 100 0 64 25 6 6 62 1.42
48885--48922 17 2.2 17 100 0 76 28 10 0 60 1.30
51911--51946 18 2.0 18 100 0 72 50 5 5 38 1.49
52054--52092 17 2.4 17 95 4 71 74 5 5 15 1.17
52049--52120 37 1.9 38 83 13 96 72 2 4 20 1.15
53192--53220 13 2.1 14 93 6 51 13 0 6 79 0.93
58781--58812 16 2.0 16 100 0 64 37 25 0 37 1.56
61423--61454 16 2.0 16 100 0 64 37 12 0 50 1.41
61420--61472 27 1.9 28 92 3 90 41 13 0 45 1.43
61460--61540 18 4.6 17 76 15 60 50 0 0 49 1.00
61486--61568 13 6.8 12 75 21 75 51 0 0 48 1.00
61478--61568 24 3.8 25 81 13 95 51 0 0 48 1.00
61581--61619 15 2.6 15 100 0 78 41 7 15 35 1.76
69409--69462 18 2.8 19 86 13 67 35 9 0 55 1.32
69912--69969 20 2.9 20 100 0 116 50 15 0 34 1.45
69893--69931 14 2.8 14 92 0 69 46 12 2 38 1.56
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69952--70003 14 3.7 14 82 10 54 53 11 0 34 1.37
70056--70090 16 2.2 16 89 0 52 40 0 14 45 1.45
78631--78676 20 2.3 20 96 3 85 32 13 15 39 1.85
81650--81698 24 2.0 24 96 0 89 28 30 12 28 1.93
84098--84130 16 2.1 16 100 0 66 33 6 6 54 1.50
85183--85222 20 2.0 20 100 0 80 40 25 5 30 1.77
89358--89388 15 2.1 15 100 0 62 19 32 0 48 1.49
91630--91712 21 3.8 21 91 4 121 14 27 10 46 1.78
91651--91719 21 3.3 21 95 0 120 13 31 8 46 1.73
94069--94111 18 2.6 17 89 10 63 32 4 23 39 1.75
115781--115826 20 2.2 20 88 7 65 82 0 2 15 0.76
115791--115829 6 6.2 6 85 11 51 84 0 0 15 0.62
116014--116108 19 5.2 19 73 24 78 63 0 0 36 0.95
116031--116111 2 42.0 2 79 7 87 59 0 0 40 0.98
116022--116108 25 3.6 25 87 7 126 62 0 0 37 0.96
116033--116111 19 3.9 19 82 12 104 59 0 0 40 0.97
116111--116163 17 3.2 17 91 5 90 16 0 11 71 1.13
116938--116980 14 3.1 14 100 0 86 20 20 6 51 1.71
117395--117424 15 2.0 15 100 0 60 33 6 6 53 1.53
120781--120842 2 32.5 2 73 15 51 45 0 1 53 1.10
120829--120908 3 27.3 3 73 14 69 70 0 0 30 0.88
120828--120908 11 7.7 11 73 15 64 69 0 0 30 0.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
120864--120932 19 3.7 19 70 18 65 72 1 0 26 0.93
120869--120916 14 3.1 16 76 14 55 75 0 0 25 0.81
120923--120976 12 4.5 12 76 0 54 51 0 3 44 1.19
120923--120976 24 2.2 24 100 0 108 51 0 3 44 1.19
120967--121000 12 2.8 12 100 0 68 50 0 5 44 1.26
120991--121057 32 2.1 33 86 8 93 53 2 1 41 1.25
121009--121082 32 2.3 31 82 11 80 52 2 2 41 1.29
121096--121158 24 2.6 25 84 5 83 53 3 1 41 1.26
121662--121701 16 2.5 16 91 0 71 42 5 5 47 1.47
127227--127327 46 2.2 46 96 0 184 28 19 14 36 1.92
129392--129429 18 2.1 18 100 0 76 55 0 5 39 1.23
130097--130124 12 2.3 12 100 0 56 21 7 0 71 1.09
151044--151118 9 9.0 9 66 16 54 33 25 8 33 1.85
151040--151130 15 5.6 17 74 16 86 36 24 6 32 1.81
151047--151123 24 3.2 24 100 0 154 33 24 7 33 1.84
153480--153548 21 3.3 21 95 0 120 46 8 31 13 1.73
153487--153569 21 3.8 21 91 4 121 46 10 27 14 1.78
155811--155841 15 2.1 15 100 0 62 48 0 32 19 1.49
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Tables: 1
The End!