NC_030193.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_030193.1 Senna tora chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 162426 Tables: 1 2 This is table 1 of 2 ( 122 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 4770--4802 12 2.6 13 85 9 50 69 0 0 30 0.88 4966--5040 16 4.6 16 73 16 66 61 4 1 33 1.23 4977--5040 25 2.7 24 77 22 64 60 4 1 32 1.26 5689--5716 14 2.0 14 100 0 56 42 0 21 35 1.53 5963--5999 18 2.1 18 94 0 65 40 5 18 35 1.74 6764--6789 13 2.0 13 100 0 52 38 0 0 61 0.96 6829--6870 14 2.9 14 83 16 59 30 0 0 69 0.89 6834--6882 22 2.2 22 85 7 64 32 2 0 65 1.04 6901--6942 20 2.0 22 90 9 70 57 0 4 38 1.20 6901--6951 20 2.4 21 87 9 68 52 1 3 41 1.31 6940--7003 19 3.1 19 80 20 83 43 4 0 51 1.22 6945--6994 24 2.1 24 100 0 100 42 4 0 54 1.19 7952--8029 4 20.2 4 72 17 67 42 0 2 55 1.13 7954--8012 23 2.5 25 81 15 81 42 0 3 54 1.17 7966--8003 11 3.4 11 80 20 51 39 0 5 55 1.23 7949--8017 21 3.4 19 80 18 77 40 0 2 56 1.14 9240--9276 8 4.4 8 87 12 56 45 10 0 43 1.39 9236--9272 18 2.1 18 100 0 74 45 10 0 43 1.39 9278--9321 15 2.9 16 83 10 65 27 2 0 70 0.99 9369--9418 12 4.2 12 80 12 59 48 0 0 52 1.00 9354--9439 18 4.8 18 71 19 56 44 0 2 53 1.13 9413--9468 29 1.9 29 82 13 71 32 1 3 62 1.23 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 9389--9476 19 4.7 18 75 14 63 37 1 2 59 1.18 9589--9632 13 3.2 13 87 6 61 36 6 0 56 1.26 10942--11007 14 4.6 15 83 10 59 37 0 0 62 0.96 10943--10973 16 2.0 15 93 6 53 29 0 0 70 0.87 10951--11030 2 44.0 2 72 18 59 47 0 0 52 1.00 10970--11032 5 12.4 5 80 9 56 52 0 0 47 1.00 11004--11032 11 2.6 11 100 0 58 62 0 0 37 0.96 11009--11066 15 4.0 15 71 20 52 55 1 0 43 1.10 11685--11720 17 2.1 17 94 0 63 50 2 5 41 1.40 14891--14931 16 2.5 17 81 18 52 14 9 4 70 1.30 15067--15128 21 3.0 21 92 2 99 32 3 0 64 1.09 15070--15130 20 3.0 20 92 2 95 36 1 0 62 1.05 15268--15305 18 2.1 18 100 0 76 34 0 0 65 0.93 16832--16874 21 2.0 21 100 0 86 34 18 4 41 1.71 16905--16943 13 2.7 15 80 19 55 51 2 0 46 1.14 31340--31395 20 2.6 20 80 11 58 19 1 3 75 1.05 31363--31403 16 2.6 16 88 7 57 19 0 2 78 0.87 31826--31869 22 2.1 21 88 12 65 47 9 9 34 1.67 35425--35464 17 2.4 17 95 0 71 27 12 0 60 1.33 35468--35498 16 1.9 16 93 0 53 48 6 12 32 1.67 40573--40660 4 21.8 4 78 15 92 28 4 0 67 1.11 40573--40737 7 23.6 7 68 22 73 32 3 0 64 1.11 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 40573--40742 12 13.9 11 74 20 96 32 3 0 64 1.11 40580--40697 28 4.2 28 84 13 131 31 4 0 64 1.13 40571--40702 46 2.8 46 85 10 153 31 4 0 64 1.14 40556--40705 28 5.4 27 83 13 130 31 4 0 64 1.14 40600--40739 21 6.0 24 73 23 106 33 2 0 63 1.09 40689--40753 35 1.9 34 82 14 82 33 3 1 61 1.21 40833--40886 21 2.6 21 100 0 108 57 0 5 37 1.22 40888--40922 13 2.8 13 91 4 54 31 14 0 54 1.40 40913--40986 2 39.0 2 72 20 61 55 4 0 40 1.19 40899--40978 7 12.0 7 75 15 62 50 7 0 42 1.30 40913--40986 23 3.2 25 83 14 95 55 4 0 40 1.19 40926--40984 13 4.8 13 80 19 65 57 3 0 38 1.15 41133--41186 2 30.5 2 72 23 50 50 0 0 50 1.00 41134--41186 9 5.7 9 81 16 63 49 0 0 50 1.00 41139--41178 7 5.6 7 88 5 62 47 0 0 52 1.00 47391--47442 13 4.1 14 72 23 60 61 5 0 32 1.20 47393--47443 23 2.2 22 86 10 75 62 5 0 31 1.19 47399--47448 23 2.1 24 96 3 93 66 4 0 30 1.10 47477--47537 14 4.6 13 82 10 61 60 13 0 26 1.33 47477--47526 26 1.9 26 87 0 73 56 16 0 28 1.41 51505--51542 20 1.9 20 84 10 51 36 5 0 57 1.21 51543--51593 18 2.8 18 77 8 59 31 11 5 50 1.62 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 51648--51904 14 17.7 15 64 24 56 53 2 0 43 1.15 51661--51712 22 2.4 22 90 3 88 48 3 0 48 1.20 51705--51742 19 2.0 19 100 0 76 68 5 0 26 1.11 51752--51899 2 85.0 2 66 26 70 51 2 0 46 1.12 51822--51905 19 4.4 18 85 11 82 48 1 0 50 1.08 51747--51897 30 5.1 29 77 12 105 51 1 0 46 1.12 51899--51949 5 9.8 5 83 8 66 72 0 7 19 1.08 51899--51949 21 2.4 22 93 6 88 72 0 7 19 1.08 51899--51949 11 4.8 11 92 7 88 72 0 7 19 1.08 52219--52244 13 2.0 13 100 0 52 46 7 7 38 1.61 55154--55201 23 2.0 24 92 8 80 33 0 16 50 1.46 56886--56941 29 2.0 29 96 3 105 48 3 7 41 1.48 60556--60591 17 2.1 17 100 0 72 27 11 0 61 1.30 62398--62445 13 3.6 13 78 13 53 22 2 4 70 1.15 62403--62447 19 2.4 19 80 0 54 22 2 2 73 1.05 62466--62491 13 2.0 13 100 0 52 69 0 7 23 1.14 62852--62886 17 2.1 17 100 0 70 37 5 11 45 1.64 64939--64965 14 1.9 14 100 0 54 62 14 0 22 1.31 69045--69115 18 3.8 18 83 10 90 45 2 0 52 1.15 69046--69129 21 4.4 19 81 12 75 44 2 0 53 1.13 69066--69129 21 2.9 21 93 6 101 43 1 0 54 1.09 69070--69125 24 2.3 24 84 9 69 46 1 0 51 1.11 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 73664--73716 23 2.3 21 79 17 61 60 5 0 33 1.20 73798--73836 21 1.9 21 89 5 62 30 23 10 35 1.88 74766--74819 18 3.0 18 97 0 99 37 12 5 44 1.66 86702--86745 22 2.0 21 91 4 70 20 4 0 75 0.98 86778--86815 10 3.8 10 86 13 60 50 0 2 47 1.15 86777--86816 20 2.0 20 100 0 80 50 0 5 45 1.23 88312--88341 15 2.0 15 93 0 51 33 30 13 23 1.93 88575--88605 15 2.1 15 100 0 62 35 6 12 45 1.68 90415--90455 20 2.0 20 100 0 82 51 0 4 43 1.23 95772--95840 21 3.1 22 77 8 68 13 20 8 57 1.61 98184--98231 9 5.3 9 82 0 60 33 6 25 35 1.81 98191--98231 18 2.3 18 95 0 73 34 7 26 31 1.84 106406--106442 18 2.1 18 89 0 56 24 8 8 59 1.53 106425--106458 16 2.1 16 100 0 68 23 11 5 58 1.55 120615--120644 15 2.0 15 100 0 60 66 6 6 20 1.38 126245--126323 19 4.3 19 82 9 83 35 5 0 59 1.19 126280--126331 11 5.0 11 86 13 83 26 9 0 63 1.25 126265--126331 30 2.2 30 91 0 107 31 7 0 61 1.24 126290--126328 19 2.1 19 100 0 78 25 10 0 64 1.25 126388--126440 18 3.1 18 91 5 83 60 0 5 33 1.20 126392--126441 16 3.0 16 91 5 73 64 0 6 30 1.18 126383--126463 34 2.3 35 76 16 87 58 0 3 38 1.16 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 128687--128766 13 6.6 12 75 16 67 37 1 2 58 1.19 128700--128745 21 2.2 21 96 3 85 39 0 0 60 0.97 128688--128766 26 3.2 26 82 17 114 37 1 2 58 1.20 128688--128788 26 4.0 26 79 18 99 38 1 1 57 1.21 128990--129021 16 2.0 16 93 0 55 71 3 18 6 1.20 133982--134018 18 2.1 18 100 0 74 40 0 21 37 1.54 134778--134825 15 3.2 15 91 5 62 2 20 6 70 1.19 146812--146845 16 2.1 16 100 0 68 58 5 11 23 1.55 147383--147420 12 2.8 13 88 11 51 73 0 7 18 1.06 155039--155079 18 2.3 18 95 0 73 31 26 7 34 1.84 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2