NC_030299.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_030299.1 Ziziphus jujuba chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161466
Tables: 1
This is table 1 of 1 ( 101 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
83--112 15 2.0 15 100 0 60 53 20 0 26 1.46
82--111 7 4.1 7 91 8 51 56 16 0 26 1.40
7032--7058 14 1.9 14 100 0 54 29 14 0 55 1.40
8597--8636 19 2.1 19 85 4 53 20 0 5 75 0.99
8747--8772 13 2.0 13 100 0 52 53 7 7 30 1.57
9065--9113 13 3.2 16 86 11 59 77 0 12 10 0.99
9065--9127 30 2.1 30 82 8 76 79 0 9 11 0.94
9078--9129 23 2.3 21 84 15 68 78 0 9 11 0.95
9146--9179 17 2.0 17 100 0 68 76 0 0 23 0.79
9374--9403 15 2.0 15 100 0 60 53 6 13 26 1.64
10449--10487 17 2.3 17 95 0 69 41 5 2 51 1.38
10447--10500 17 2.9 19 83 8 67 44 3 1 50 1.30
10869--10905 17 2.3 17 90 9 60 35 10 0 54 1.36
10883--10934 28 1.9 26 84 7 68 42 3 0 53 1.19
10900--10945 17 2.6 18 93 6 85 45 0 0 54 0.99
11217--11259 22 2.0 22 90 0 68 46 0 9 44 1.35
11228--11261 11 3.1 11 86 0 50 47 0 11 41 1.40
13751--13780 15 2.0 15 93 0 51 33 13 10 43 1.77
14323--14356 17 2.0 17 100 0 68 41 11 17 29 1.85
15205--15246 20 2.1 20 95 0 75 35 19 11 33 1.88
28493--28533 22 1.9 22 90 5 66 41 17 9 31 1.82
29788--29819 15 2.1 15 94 0 55 34 0 3 62 1.11
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
29784--29820 19 1.9 19 88 0 56 32 0 2 64 1.07
29905--29954 14 3.6 13 78 21 57 58 0 6 36 1.23
29909--29958 16 3.2 16 88 8 77 62 0 6 32 1.20
29907--29974 13 5.2 13 77 19 61 61 1 5 30 1.28
30398--30441 21 2.1 21 100 0 88 40 4 9 45 1.56
34265--34290 13 2.0 13 100 0 52 53 15 7 23 1.67
34774--34813 21 2.0 20 85 5 53 42 15 0 42 1.46
38855--38881 9 3.0 9 100 0 54 55 11 0 33 1.35
38864--38939 26 3.0 25 72 18 68 57 3 2 35 1.31
38896--38940 10 4.2 11 83 11 58 62 0 2 35 1.08
39042--39067 13 2.0 13 100 0 52 76 7 0 15 0.99
39231--39264 17 2.0 17 100 0 68 35 0 11 52 1.38
47188--47216 15 1.9 15 100 0 58 58 0 0 41 0.98
47230--47279 25 2.0 24 88 11 75 44 0 4 52 1.20
47251--47288 16 2.4 16 86 4 51 44 0 0 55 0.99
49547--49577 15 2.1 15 93 0 53 48 0 6 45 1.28
49650--49690 16 2.7 15 92 7 73 63 4 4 26 1.35
50652--50685 17 2.0 17 100 0 68 29 5 11 52 1.61
51172--51227 28 2.0 28 100 0 112 39 14 10 35 1.81
52339--52368 15 2.0 15 100 0 60 6 13 26 53 1.64
53151--53183 16 2.1 16 100 0 66 18 0 12 69 1.18
53149--53200 22 2.3 23 80 9 63 23 0 13 63 1.29
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
54774--54807 17 1.9 18 94 5 61 47 5 5 41 1.52
54899--54936 18 2.1 18 100 0 76 23 0 21 55 1.44
58441--58510 9 8.1 9 70 25 53 32 0 0 67 0.91
58439--58520 18 4.4 18 83 13 105 34 0 0 65 0.93
60557--60604 14 3.5 14 81 13 64 31 2 0 66 1.03
60557--60621 13 4.7 13 78 17 69 32 1 0 66 1.01
60605--60646 21 2.0 21 100 0 84 28 4 4 61 1.36
62855--62879 12 2.1 12 100 0 50 24 16 0 60 1.36
62878--62915 17 2.2 18 90 4 60 47 0 0 52 1.00
62907--62941 18 1.9 18 100 0 70 25 5 5 62 1.40
63460--63503 20 2.2 20 91 4 70 34 0 0 65 0.93
63471--63524 25 2.0 26 82 10 65 44 0 0 55 0.99
63485--63517 16 2.1 16 100 0 66 42 0 0 57 0.98
63464--63522 16 3.1 20 72 20 54 40 0 0 59 0.97
63544--63576 15 2.3 15 89 5 50 33 15 6 45 1.70
63579--63604 13 2.0 13 100 0 52 23 7 0 69 1.14
64130--64169 11 3.5 11 81 18 55 45 10 10 35 1.71
64131--64177 23 2.0 23 100 0 94 48 8 8 34 1.64
67356--67388 15 2.2 15 100 0 66 6 6 6 81 0.97
69737--69806 9 7.8 9 82 4 88 54 0 0 45 0.99
69737--69804 3 22.7 3 73 5 57 55 0 0 44 0.99
70285--70331 23 2.0 23 100 0 94 21 8 17 53 1.70
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
72253--72284 15 2.1 15 100 0 64 65 6 0 28 1.16
72386--72424 21 1.9 21 94 5 71 30 23 10 35 1.88
74298--74352 22 2.6 22 88 8 80 45 0 7 47 1.30
85399--85432 11 2.9 12 91 8 61 44 14 8 32 1.76
85440--85484 9 5.3 9 79 15 60 42 0 2 55 1.12
85443--85489 24 2.0 24 100 0 94 40 0 4 55 1.19
87398--87431 17 2.0 17 100 0 68 29 11 5 52 1.61
87391--87415 11 2.3 11 100 0 50 28 8 8 56 1.57
89821--89860 20 2.0 20 95 0 71 37 10 2 50 1.50
93621--93645 12 2.1 12 100 0 50 44 0 24 32 1.54
94038--94105 21 3.2 21 82 0 82 11 22 7 58 1.57
96458--96565 18 6.0 18 100 0 216 33 5 27 33 1.80
98786--98825 20 2.0 20 100 0 80 40 20 15 25 1.90
104047--104073 12 2.2 12 100 0 54 7 7 0 85 0.75
104044--104082 17 2.3 17 86 8 53 7 12 0 79 0.93
104599--104631 11 3.1 11 91 4 50 33 0 15 51 1.43
105465--105517 25 2.1 25 100 0 106 18 15 18 47 1.83
105600--105631 16 2.0 16 100 0 64 31 37 6 25 1.81
112819--112884 32 2.1 32 97 0 123 40 24 9 25 1.84
118314--118344 15 2.1 15 100 0 62 54 6 12 25 1.62
118349--118378 15 2.0 15 100 0 60 46 13 0 40 1.43
126849--126897 15 3.5 13 81 10 53 59 0 2 38 1.09
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
126848--126926 13 5.9 13 71 16 56 54 1 1 43 1.16
134391--134420 16 1.9 16 93 6 53 26 6 13 53 1.64
137703--137768 32 2.1 32 97 0 123 25 9 24 40 1.84
144956--144987 16 2.0 16 100 0 64 25 6 37 31 1.81
145070--145122 25 2.1 25 100 0 106 47 18 15 18 1.83
145956--145988 11 3.1 11 91 4 50 51 15 0 33 1.43
146505--146543 17 2.3 17 86 8 53 79 0 12 7 0.93
146514--146540 12 2.2 12 100 0 54 85 0 7 7 0.75
151762--151801 20 2.0 20 100 0 80 25 15 20 40 1.90
154022--154129 18 6.0 18 100 0 216 33 27 5 33 1.80
156483--156571 21 4.1 21 81 5 81 56 7 23 12 1.62
156942--156966 12 2.1 12 100 0 50 32 24 0 44 1.54
160727--160766 20 2.0 20 95 0 71 50 2 10 37 1.50
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Tables: 1
The End!