NC_030631.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_030631.1 Pseudolarix amabilis chloroplast DNA, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 122234
Tables: 1
This is table 1 of 1 ( 37 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
19061--19087 1 27.0 1 100 0 54 0 0 0 100 0.00
19562--19605 21 2.1 21 95 0 79 29 22 13 34 1.93
26578--26613 18 2.0 18 100 0 72 27 11 16 44 1.82
37355--37384 15 2.0 15 100 0 60 46 6 20 26 1.75
41693--41776 41 2.0 41 97 0 159 14 34 14 36 1.86
44797--44847 25 2.0 25 100 0 102 37 7 7 47 1.62
64631--64661 16 1.9 16 100 0 62 38 25 3 32 1.72
69066--69177 48 2.3 48 96 0 215 34 17 17 29 1.94
70431--70519 42 2.1 42 83 4 108 43 5 20 30 1.74
70599--70721 60 2.0 60 96 0 228 33 16 22 27 1.95
71680--71884 27 7.6 27 93 0 338 36 14 16 33 1.88
72082--72279 66 3.0 66 96 0 369 37 12 28 21 1.90
72542--72669 24 5.3 24 87 3 177 53 7 25 14 1.67
72539--72680 72 2.0 72 91 0 230 54 8 23 13 1.66
72868--73013 60 2.4 60 97 0 274 44 7 27 20 1.78
74526--74567 16 2.6 16 96 0 75 14 21 21 42 1.88
75171--75201 15 2.1 15 100 0 62 45 12 6 35 1.68
85557--85617 15 4.1 15 93 0 104 21 22 13 42 1.87
86263--86292 12 2.5 12 94 0 51 26 13 16 43 1.85
91969--92044 37 2.1 37 97 0 143 5 27 2 64 1.28
92125--92193 20 3.3 20 69 15 68 46 21 8 23 1.79
92118--92207 42 2.1 42 93 0 153 44 23 7 24 1.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92117--92601 34 13.7 38 73 16 223 46 23 7 23 1.77
92187--92249 14 4.5 14 91 0 90 39 31 1 26 1.66
92275--92338 20 3.5 20 66 24 59 48 20 10 20 1.79
92145--92601 68 6.6 68 85 6 571 46 23 7 23 1.76
92229--92601 34 11.0 34 79 6 434 47 22 7 22 1.76
92346--92385 20 2.0 20 85 9 55 50 25 0 25 1.50
92333--92374 14 3.0 14 76 13 50 47 26 0 26 1.52
92414--92453 20 2.0 20 85 9 55 50 25 0 25 1.50
92401--92442 14 3.0 14 76 13 50 47 26 0 26 1.52
92445--92542 20 5.5 20 63 26 67 48 20 10 20 1.78
92550--92589 20 2.0 20 85 9 55 50 25 0 25 1.50
93002--93031 15 2.0 15 100 0 60 26 20 6 46 1.75
97617--97647 15 2.1 15 100 0 62 32 0 25 41 1.56
113036--113065 15 2.0 15 93 0 51 50 10 20 20 1.76
114726--114765 21 1.9 21 94 0 71 40 12 37 10 1.77
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Tables: 1
The End!