NC_030702.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_030702.1 Zanthoxylum schinifolium isolate IM2014_ZS chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158963
Tables: 1
This is table 1 of 1 ( 43 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8147--8181 17 2.1 17 100 0 70 40 28 17 14 1.88
8712--8753 21 2.0 21 100 0 84 33 19 9 38 1.84
9479--9511 15 2.2 15 100 0 66 36 0 6 57 1.23
10910--10943 8 4.2 8 88 11 52 32 0 0 67 0.91
10910--10939 15 2.0 15 100 0 60 33 0 0 66 0.92
30386--30415 15 2.0 15 100 0 60 40 6 6 46 1.56
30430--30485 28 2.0 28 100 0 112 32 10 7 50 1.64
31990--32023 8 4.0 8 85 14 50 61 11 0 26 1.30
31990--32025 18 2.0 18 100 0 72 61 11 0 27 1.30
32029--32070 19 2.2 19 100 0 84 14 9 0 76 1.02
38084--38116 16 2.1 16 100 0 66 48 0 21 30 1.50
38916--39016 19 5.5 19 73 10 93 51 0 4 43 1.23
38906--39010 53 1.9 56 94 5 189 51 0 4 43 1.22
38892--39013 26 4.9 23 68 19 59 50 0 4 44 1.23
39005--39066 23 2.6 22 90 10 79 58 1 1 38 1.18
39027--39068 12 3.6 12 81 18 61 59 0 0 40 0.97
39023--39080 23 2.5 23 88 5 73 62 0 1 36 1.06
45285--45318 16 2.1 16 88 0 50 64 5 5 23 1.38
48114--48189 38 2.0 38 100 0 152 26 10 31 31 1.90
49542--49572 15 2.1 15 100 0 62 25 19 0 54 1.44
53634--53671 10 3.9 10 83 16 53 5 2 28 63 1.30
53644--53683 19 2.0 21 90 9 66 5 5 27 62 1.37
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
53879--53915 18 2.1 18 100 0 74 21 10 5 62 1.48
61819--61867 25 2.0 24 88 4 71 42 10 4 42 1.57
62247--62274 14 2.0 14 100 0 56 21 21 0 57 1.41
70724--70805 27 3.0 27 98 0 155 47 7 4 40 1.53
70909--70947 21 1.9 21 89 5 62 33 25 10 30 1.89
84660--84695 17 2.1 17 100 0 72 41 11 11 36 1.76
87716--87761 23 2.0 23 100 0 92 47 17 8 26 1.76
91894--91968 21 3.2 24 72 12 75 10 22 9 57 1.61
94340--94406 9 7.4 9 68 0 53 29 10 28 31 1.90
94336--94407 18 4.0 18 98 0 135 29 9 27 33 1.89
102163--102200 12 3.2 12 85 11 51 7 5 0 86 0.69
102696--102733 18 2.1 18 90 0 58 23 7 7 60 1.51
110831--110892 32 1.9 32 96 0 115 38 24 9 27 1.86
113604--113637 17 2.0 17 100 0 68 41 0 17 41 1.50
122522--122554 16 2.1 16 100 0 66 45 6 12 36 1.66
134600--134661 32 1.9 32 96 0 115 27 9 24 38 1.86
142759--142796 18 2.1 18 90 0 58 60 7 7 23 1.51
143292--143329 12 3.2 12 85 7 51 86 0 5 7 0.69
151085--151156 18 4.0 18 98 0 135 33 27 9 29 1.89
153524--153598 21 3.2 24 72 12 75 57 9 22 10 1.61
157731--157776 23 2.0 23 100 0 92 26 8 17 47 1.76
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Tables: 1
The End!