NC_030755.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_030755.1 Perilla frutescens cultivar viridis voucher P170 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152588
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6143--6175 16 2.0 17 94 5 59 54 3 12 30 1.52
6234--6258 10 2.5 10 100 0 50 40 8 8 44 1.63
8285--8314 15 2.0 15 93 0 51 53 23 6 16 1.66
8899--8930 15 2.1 16 94 5 57 37 3 0 59 1.13
27293--27327 17 2.1 17 100 0 70 42 11 5 40 1.65
27484--27512 10 3.0 10 95 5 51 41 0 10 48 1.37
32097--32126 15 2.0 15 100 0 60 60 6 13 20 1.55
35330--35359 15 2.0 15 93 0 51 26 16 0 56 1.40
41770--41821 18 2.9 18 86 13 72 46 0 5 48 1.26
45979--46054 12 6.8 12 77 17 67 52 1 2 43 1.23
50546--50570 12 2.1 12 100 0 50 24 8 16 52 1.70
58792--58823 16 2.0 16 93 0 55 28 21 12 37 1.90
59893--59938 21 2.2 21 92 0 74 30 21 15 32 1.94
62021--62050 14 2.1 14 93 0 51 30 13 3 53 1.56
63791--63845 23 2.4 23 88 8 78 47 3 5 43 1.44
67752--67787 15 2.4 15 95 0 63 55 8 13 22 1.65
67895--67935 21 2.0 21 90 0 64 29 24 9 36 1.87
88517--88571 24 2.5 22 85 8 67 14 23 12 49 1.78
88539--88606 21 3.2 21 77 8 75 11 22 10 55 1.65
90935--91012 18 4.3 18 93 0 138 30 10 25 33 1.89
98720--98754 17 2.0 18 94 5 63 28 0 22 48 1.51
106706--106766 31 2.0 31 93 0 104 40 21 9 27 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
110978--111016 20 2.0 20 85 10 53 56 23 0 20 1.42
125610--125644 14 2.5 14 85 0 52 2 14 5 77 1.07
129522--129582 31 2.0 31 93 0 104 27 9 21 40 1.85
137534--137568 17 2.0 18 94 5 63 48 22 0 28 1.51
145276--145353 18 4.3 18 93 0 138 33 25 10 30 1.89
147700--147753 21 2.6 21 82 11 74 59 11 20 9 1.59
147682--147771 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!