NC_030773.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_030773.1 Eclipta prostrata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151757
Tables: 1
This is table 1 of 1 ( 41 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4881--4926 17 2.8 17 78 15 53 54 6 0 39 1.26
10564--10607 21 2.1 21 100 0 88 50 9 4 36 1.55
12511--12544 16 2.1 16 100 0 68 23 11 11 52 1.70
12560--12591 16 2.0 16 93 0 55 31 21 6 40 1.78
25915--25953 18 2.2 18 100 0 78 30 20 5 43 1.73
34775--34800 13 2.0 13 100 0 52 38 7 23 30 1.83
44512--44537 12 2.2 12 100 0 52 42 0 7 50 1.31
49995--50025 15 2.1 15 100 0 62 45 0 12 41 1.42
51127--51156 15 2.0 15 93 0 51 36 16 13 33 1.88
53794--53823 15 2.0 15 100 0 60 20 20 13 46 1.83
53890--53920 16 1.9 16 93 0 53 45 22 3 29 1.68
58309--58342 16 2.1 16 100 0 68 38 11 5 44 1.65
64086--64125 21 2.0 20 90 9 64 40 7 27 25 1.82
64176--64221 23 2.0 23 100 0 92 39 4 17 39 1.69
66126--66168 13 3.5 13 84 9 63 37 9 6 46 1.63
66318--66343 13 2.0 13 100 0 52 23 15 15 46 1.83
67001--67026 13 2.0 13 100 0 52 61 7 7 23 1.49
67162--67202 21 2.0 21 95 0 73 31 24 9 34 1.88
81819--81861 21 2.0 21 95 0 77 44 2 13 39 1.57
90558--90626 9 7.7 9 70 0 57 28 11 26 33 1.91
90564--90626 18 3.5 18 100 0 126 28 11 26 33 1.91
92552--92581 10 3.0 10 100 0 60 30 10 20 40 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
97700--97755 22 2.5 23 97 2 105 23 3 7 66 1.33
98583--98626 22 2.0 22 100 0 88 40 9 4 45 1.56
106245--106306 32 1.9 32 93 0 106 41 22 8 27 1.82
108360--108431 11 6.6 11 71 25 64 59 9 6 23 1.53
108350--108438 30 3.2 30 83 15 127 58 8 6 25 1.53
108354--108396 19 2.3 19 84 8 52 58 11 4 25 1.52
108390--108438 24 2.0 24 100 0 98 59 8 8 24 1.54
111584--111613 14 2.1 14 100 0 60 33 6 20 40 1.78
112377--112406 13 2.3 13 94 0 51 0 3 3 93 0.42
112373--112408 17 2.1 17 94 5 63 0 5 2 91 0.49
112761--112794 11 3.1 11 100 0 68 47 8 0 44 1.34
117286--117327 20 2.1 20 95 0 75 30 2 4 61 1.29
123237--123276 21 1.9 21 89 0 62 42 30 2 25 1.68
128737--128798 32 1.9 32 93 0 106 27 8 22 41 1.82
136417--136460 22 2.0 22 100 0 88 45 4 9 40 1.56
137288--137343 22 2.5 23 97 2 105 66 7 3 23 1.33
142462--142491 10 3.0 10 100 0 60 40 20 10 30 1.85
144417--144479 18 3.5 18 100 0 126 33 26 11 28 1.91
144417--144485 9 7.7 9 70 0 57 33 26 11 28 1.91
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Tables: 1
The End!