NC_030785.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_030785.1 Artemisia argyi chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151192
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2048--2086 19 2.1 19 100 0 78 30 10 0 58 1.31
5030--5063 15 2.3 15 94 0 59 55 11 8 23 1.63
5043--5088 23 2.0 23 100 0 92 56 13 13 17 1.67
5066--5100 15 2.4 15 90 4 54 57 11 8 22 1.61
5677--5705 11 2.6 11 100 0 58 65 0 0 34 0.93
25114--25138 12 2.1 12 100 0 50 60 8 8 24 1.52
30161--30203 21 2.0 22 90 4 70 48 25 6 18 1.73
45873--45906 17 2.0 17 100 0 68 70 0 17 11 1.16
47698--47732 15 2.4 14 90 9 52 60 20 0 20 1.37
51767--51801 15 2.3 15 90 0 52 34 14 14 37 1.86
56254--56303 24 2.1 24 96 0 91 36 14 18 32 1.90
57110--57165 21 2.4 23 82 14 62 33 7 12 46 1.69
65403--65438 17 2.1 17 100 0 72 58 5 19 16 1.58
66849--66889 21 2.0 21 95 0 73 31 24 9 34 1.88
76540--76567 14 2.0 14 100 0 56 42 7 7 42 1.59
82658--82697 19 2.0 20 90 4 64 42 0 0 57 0.98
90149--90223 18 4.4 17 88 8 73 29 8 25 37 1.84
90160--90223 9 7.1 9 74 0 65 29 7 26 35 1.85
90159--90236 18 4.3 18 96 0 138 29 10 25 34 1.89
97815--97839 10 2.5 10 100 0 50 40 8 0 52 1.31
105826--105887 32 1.9 32 96 0 115 41 20 8 29 1.81
118377--118419 21 2.0 21 100 0 86 58 4 0 37 1.19
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
128236--128297 32 1.9 32 96 0 115 29 8 20 41 1.81
136284--136308 10 2.5 10 100 0 50 52 0 8 40 1.31
143887--143964 18 4.3 18 96 0 138 34 25 10 29 1.89
143887--143964 9 8.7 9 71 0 66 34 25 10 29 1.89
143936--143974 18 2.4 16 87 12 53 41 23 5 30 1.76
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!