NC_031333.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_031333.1 Oryza sativa cultivar TN1 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 134502
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6350--6386 17 2.2 17 90 0 56 40 21 0 37 1.54
14998--15127 69 1.9 69 85 3 181 28 15 26 30 1.96
17024--17052 14 2.0 15 93 6 51 75 0 17 6 1.01
17275--17306 15 2.1 16 94 5 57 12 18 0 68 1.20
17708--17772 32 2.0 32 100 0 130 33 9 15 41 1.79
24625--24665 21 2.0 21 90 0 64 29 24 14 31 1.95
26664--26725 21 3.0 21 70 0 61 43 14 29 12 1.83
26692--26816 21 6.0 21 70 10 85 42 15 25 16 1.87
26664--26816 42 3.6 42 84 3 166 42 14 26 16 1.86
26933--26962 12 2.5 12 100 0 60 43 13 36 6 1.70
26900--26986 45 1.9 45 86 4 122 39 14 35 10 1.81
53855--53891 18 2.1 18 100 0 74 48 5 10 35 1.61
61271--61297 13 2.1 13 100 0 54 70 14 0 14 1.17
65605--65725 21 5.8 21 89 0 143 40 27 4 27 1.77
66013--66071 21 2.8 21 72 10 57 45 23 11 18 1.83
68377--68410 17 2.0 17 94 0 59 50 5 14 29 1.67
76203--76249 18 2.6 18 89 0 67 19 23 17 40 1.91
76483--76535 18 3.3 16 75 15 56 7 18 1 71 1.19
76481--76524 18 2.4 18 84 0 61 6 15 2 75 1.12
76482--76540 16 3.6 16 74 19 59 6 18 1 72 1.15
76616--76656 21 2.0 21 95 0 73 19 21 36 21 1.95
78853--78890 19 2.1 18 85 14 51 13 36 0 50 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
79758--79854 45 2.2 45 84 1 133 21 15 14 48 1.80
84779--84850 16 4.4 16 65 25 51 33 11 15 40 1.82
84749--84850 50 2.0 50 98 0 195 35 11 14 38 1.83
130200--130271 16 4.4 16 65 25 51 40 15 11 33 1.82
130200--130301 50 2.0 50 98 0 195 38 14 11 35 1.83
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Tables: 1
The End!