NC_031829.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_031829.1 Allium sativum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153172
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
16--46 15 2.1 15 100 0 62 41 0 19 38 1.51
4946--4974 14 2.1 14 100 0 58 65 13 0 20 1.26
5789--5848 30 2.0 30 100 0 120 50 6 16 26 1.70
12554--12597 13 3.6 13 76 17 58 70 9 0 20 1.14
12552--12598 23 2.0 23 100 0 94 70 8 0 21 1.14
28784--28812 14 2.1 14 100 0 58 20 13 0 65 1.26
35927--35964 19 2.0 19 89 0 58 57 5 7 28 1.49
46005--46038 17 2.0 17 100 0 68 47 11 11 29 1.76
46132--46174 18 2.3 19 92 8 79 32 9 0 58 1.30
47925--47967 21 2.0 21 95 0 77 23 9 6 60 1.51
55447--55475 14 2.1 14 100 0 58 65 6 13 13 1.45
55904--55960 16 3.4 16 83 7 78 24 5 1 68 1.20
55933--55978 23 2.0 23 100 0 92 26 4 4 65 1.30
59222--59284 20 3.2 20 100 0 126 36 9 0 53 1.33
61703--61730 14 2.0 14 100 0 56 28 14 14 42 1.84
64156--64202 23 2.0 23 100 0 94 53 4 12 29 1.58
66134--66174 21 2.0 21 90 0 64 31 29 12 26 1.92
78706--78737 15 2.1 15 100 0 64 31 0 0 68 0.90
78702--78747 12 3.6 12 81 16 56 39 0 0 60 0.97
80339--80374 18 2.0 18 100 0 72 33 5 0 61 1.19
80383--80411 15 2.0 15 93 6 51 65 6 0 27 1.18
84717--84768 23 2.3 23 96 3 97 46 7 21 25 1.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
87342--87452 21 5.1 21 93 3 159 14 27 9 48 1.74
89802--89868 24 3.6 18 74 25 59 32 7 22 37 1.82
89809--89861 24 2.2 24 96 0 97 33 9 22 33 1.86
97438--97475 18 2.1 18 100 0 76 28 15 0 55 1.41
108607--108665 22 2.6 23 92 7 95 54 0 6 38 1.27
111083--111126 23 1.9 23 85 0 61 40 4 4 50 1.43
113817--113862 14 3.1 14 88 11 74 52 10 23 13 1.71
113816--113862 16 3.1 16 90 9 80 51 10 25 12 1.72
116306--116370 15 4.3 15 74 14 62 36 3 1 58 1.23
123191--123251 30 2.0 30 96 0 113 18 27 8 45 1.77
124387--124441 24 2.4 22 76 11 56 16 12 7 63 1.50
137733--137770 18 2.1 18 100 0 76 55 0 15 28 1.41
145340--145406 24 3.6 18 74 25 59 37 22 7 32 1.82
145347--145399 24 2.2 24 96 0 97 33 22 9 33 1.86
147756--147866 21 5.1 21 93 3 159 48 9 27 14 1.74
150440--150491 23 2.3 23 96 3 97 25 21 7 46 1.77
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!