NC_031834.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_031834.1 Coccinia grandis voucher M:Sousa and Silber 2 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157035
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4581--4611 11 2.8 11 95 0 53 64 0 0 35 0.94
6244--6288 18 2.5 19 78 10 58 37 6 2 53 1.40
8763--8800 19 2.1 19 90 5 60 13 23 0 63 1.30
8799--8863 16 3.9 16 78 7 67 46 3 9 41 1.51
10289--10361 4 18.0 4 72 18 53 52 0 0 47 1.00
10302--10364 17 3.8 17 91 2 101 53 0 0 46 1.00
10301--10394 34 2.9 33 84 7 113 53 2 2 42 1.25
10348--10411 30 2.2 29 97 2 119 54 6 6 32 1.50
10851--10877 13 2.1 13 100 0 54 55 7 14 22 1.64
29968--30014 18 2.7 18 83 3 60 42 21 8 27 1.81
34273--34331 25 2.4 25 88 5 84 45 8 8 37 1.65
34273--34323 25 2.0 26 92 3 86 41 9 7 41 1.67
38317--38368 13 3.8 13 73 14 50 36 17 15 30 1.91
48936--48965 15 2.0 15 100 0 60 40 0 13 46 1.43
58891--58928 19 2.0 19 100 0 76 36 10 26 26 1.89
61746--61779 12 3.0 12 91 8 54 61 8 0 29 1.26
67854--67890 17 2.2 17 95 0 65 37 2 5 54 1.38
91511--91566 24 2.5 24 85 8 73 14 17 14 53 1.73
91531--91599 21 3.3 21 81 2 77 11 21 8 57 1.60
93959--94015 18 3.2 18 94 0 105 31 5 28 35 1.79
93959--94015 9 6.3 9 72 0 51 31 5 28 35 1.79
110040--110105 32 2.1 32 97 0 123 40 24 9 25 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
133695--133760 32 2.1 32 97 0 123 25 9 24 40 1.84
149785--149841 18 3.2 18 94 0 105 35 28 5 31 1.79
149785--149841 9 6.3 9 72 0 51 35 28 5 31 1.79
152218--152269 21 2.5 21 87 0 77 59 11 19 9 1.59
152233--152289 24 2.5 22 86 8 71 54 14 17 14 1.71
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Tables: 1
The End!