NC_032698.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_032698.1 Anemarrhena asphodeloides chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156867
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5866--5890 11 2.3 11 100 0 50 56 8 0 36 1.29
12791--12858 18 3.9 18 83 9 63 61 2 1 33 1.20
12785--12824 13 3.3 13 80 13 50 57 0 0 42 0.98
12826--12861 18 2.0 18 100 0 72 66 5 5 22 1.34
30212--30242 15 2.1 15 100 0 62 48 6 25 19 1.72
36544--36577 18 1.9 18 88 5 52 32 5 2 58 1.37
46923--46964 18 2.3 19 87 4 59 40 4 4 50 1.45
46957--47004 24 2.1 22 92 7 78 52 0 0 47 1.00
47018--47047 15 2.0 15 93 0 51 60 3 0 36 1.14
48485--48509 12 2.1 12 100 0 50 48 8 0 44 1.32
59820--59887 24 2.9 23 77 20 61 64 2 13 19 1.40
61357--61391 17 2.1 17 100 0 70 37 5 11 45 1.64
61661--61739 10 7.9 10 69 9 54 36 2 1 59 1.19
61723--61752 12 2.4 12 94 5 51 26 0 0 73 0.84
61696--61811 25 4.9 22 70 22 67 30 4 0 64 1.18
61681--61824 52 2.8 51 72 17 125 31 3 1 63 1.19
64546--64570 13 1.9 13 100 0 50 8 4 0 88 0.64
69075--69118 21 2.1 21 91 0 70 31 25 11 31 1.91
80514--80562 24 2.0 24 92 0 80 28 32 12 26 1.92
87647--87698 23 2.3 23 96 3 97 46 7 21 25 1.77
90272--90361 21 4.1 21 92 4 135 13 26 10 50 1.73
92711--92777 24 3.6 18 74 25 59 32 7 22 37 1.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92718--92770 24 2.2 24 96 0 97 33 9 22 33 1.86
110550--110615 18 3.4 18 69 25 53 37 12 19 30 1.88
119520--119565 16 2.8 17 83 12 60 34 0 4 60 1.16
122438--122481 17 2.4 18 81 14 54 45 13 4 36 1.64
122612--122660 20 2.5 20 83 3 64 10 16 2 71 1.22
131241--131306 18 3.4 18 69 25 53 30 19 12 37 1.88
149079--149145 24 3.6 18 74 25 59 37 22 7 32 1.82
149086--149138 24 2.2 24 96 0 97 33 22 9 33 1.86
151495--151584 21 4.1 21 92 4 135 50 10 26 13 1.73
154158--154209 23 2.3 23 96 3 97 25 21 7 46 1.77
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Tables: 1
The End!