NC_033535.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_033535.1 Rhus chinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 149011
Tables: 1
This is table 1 of 1 ( 41 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2549--2626 18 4.3 18 95 0 120 33 24 8 33 1.87
4991--5044 24 2.2 25 90 3 83 57 7 24 11 1.58
10327--10357 15 2.1 15 93 0 53 51 12 9 25 1.70
13564--13605 20 2.1 20 95 0 75 38 9 16 35 1.81
13734--13764 15 2.1 15 100 0 62 25 0 19 54 1.44
14558--14588 16 1.9 16 93 0 53 45 12 0 41 1.42
14820--14850 15 2.1 15 93 0 53 54 12 9 22 1.67
14858--14902 14 3.1 14 84 6 54 62 0 4 33 1.15
15207--15260 26 2.1 26 96 0 99 40 9 3 46 1.54
15790--15825 18 2.0 18 100 0 72 50 11 5 33 1.61
16803--16891 23 3.9 23 97 1 162 60 0 0 39 0.97
21336--21365 15 2.0 15 93 0 51 43 10 0 46 1.37
21431--21467 18 2.1 18 94 0 65 35 0 0 64 0.94
25881--25911 14 2.2 14 94 0 53 16 3 12 67 1.35
26932--26956 13 1.9 13 100 0 50 24 8 0 68 1.16
38813--38856 22 2.0 22 100 0 88 22 18 22 36 1.95
55226--55250 12 2.1 12 100 0 50 32 8 8 52 1.60
59441--59470 15 2.0 15 93 0 51 33 6 3 56 1.42
60435--60486 26 2.0 26 92 0 86 51 11 7 28 1.65
69498--69530 12 2.5 13 85 14 50 54 15 3 27 1.55
72065--72091 13 2.1 13 100 0 54 40 7 7 44 1.60
73791--73833 12 3.6 11 79 14 50 37 20 2 39 1.66
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
78387--78429 21 2.0 21 90 0 68 37 18 25 18 1.94
81308--81341 15 2.3 15 89 0 50 38 2 26 32 1.71
83538--83589 27 1.9 27 92 0 86 61 1 7 28 1.34
83579--83617 18 2.2 18 100 0 78 51 10 5 33 1.58
88218--88243 13 2.0 13 100 0 52 15 15 30 38 1.88
102670--102707 18 2.1 18 95 0 67 23 7 5 63 1.42
103350--103380 15 2.1 15 100 0 62 35 12 32 19 1.90
107258--107329 38 1.9 37 94 2 126 31 22 25 20 1.98
110856--110916 31 2.0 31 96 0 113 39 22 9 27 1.86
112445--112480 18 2.0 18 94 0 63 55 13 5 25 1.60
116022--116083 30 2.1 30 100 0 124 54 6 12 25 1.62
116781--116819 17 2.3 17 95 0 69 64 5 10 20 1.44
116856--116896 20 2.0 20 100 0 82 48 12 9 29 1.72
119215--119258 22 2.0 22 95 0 79 18 13 2 65 1.36
133414--133449 18 2.0 18 94 0 63 25 5 13 55 1.60
134978--135038 31 2.0 31 96 0 113 27 9 22 39 1.86
138565--138636 38 1.9 37 94 2 126 20 25 22 31 1.98
142514--142544 15 2.1 15 100 0 62 19 32 12 35 1.90
143187--143224 18 2.1 18 95 0 67 63 5 7 23 1.42
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Tables: 1
The End!