NC_033913.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_033913.1 Akebia quinata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157817
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
33099--33137 13 2.8 13 84 7 51 46 7 5 41 1.55
33356--33390 17 2.1 17 100 0 70 54 5 5 34 1.48
34251--34301 21 2.5 20 84 6 59 74 3 13 7 1.18
48818--48863 11 4.2 11 88 0 74 58 0 0 41 0.98
48824--48870 22 2.1 22 100 0 94 55 0 0 44 0.99
48889--48920 16 2.0 16 93 0 55 31 6 9 53 1.58
56751--56776 13 2.0 13 100 0 52 38 0 15 46 1.46
58811--58853 20 2.1 21 91 4 70 44 0 6 48 1.29
60867--60901 17 2.1 17 100 0 70 28 11 0 60 1.32
60924--60948 12 2.1 12 100 0 50 76 0 0 24 0.80
65699--65740 21 2.0 21 100 0 84 33 0 9 57 1.31
69544--69570 13 2.1 13 100 0 54 62 14 14 7 1.51
69636--69666 14 2.2 14 94 0 53 45 0 16 38 1.47
70070--70102 13 2.5 14 85 14 52 57 6 0 36 1.23
81555--81600 24 1.9 24 95 0 83 28 28 13 30 1.94
84371--84401 15 2.1 15 100 0 62 25 12 0 61 1.32
84491--84530 20 2.0 20 100 0 80 50 0 5 45 1.23
91360--91448 21 4.1 21 91 5 126 13 24 10 51 1.71
95842--95875 17 2.0 17 100 0 68 41 17 11 29 1.85
101120--101168 19 2.6 19 93 3 82 44 10 4 40 1.57
111126--111155 14 2.1 14 100 0 60 60 13 13 13 1.60
111579--111613 17 2.1 17 100 0 70 48 11 11 28 1.74
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112822--112874 29 2.0 28 82 14 67 66 3 7 22 1.34
115893--115927 17 2.1 17 88 0 52 48 2 20 28 1.63
120776--120816 17 2.3 18 91 4 66 34 12 4 48 1.62
130621--130662 21 2.0 21 90 9 68 28 11 16 42 1.84
132748--132782 17 2.1 17 100 0 70 28 11 11 48 1.74
133206--133235 14 2.1 14 100 0 60 13 13 13 60 1.60
143193--143241 19 2.6 19 93 3 82 40 4 10 44 1.57
148486--148519 17 2.0 17 100 0 68 29 11 17 41 1.85
152913--153001 21 4.1 21 91 5 126 51 10 24 13 1.71
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Tables: 1
The End!