NC_033979.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_033979.1 Ficus religiosa voucher Ronsted86 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160627
Tables: 1
This is table 1 of 1 ( 44 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6845--6893 25 2.0 25 88 8 73 55 2 0 42 1.11
8906--8934 14 2.0 15 93 6 51 41 6 0 51 1.28
10701--10759 20 3.1 18 77 15 57 66 3 1 28 1.18
28632--28668 11 3.4 11 100 0 74 64 8 8 18 1.45
29972--30027 19 3.1 18 77 10 60 32 5 3 58 1.37
30804--30868 21 3.1 21 100 0 130 44 13 4 36 1.65
31101--31142 21 2.0 21 95 0 75 50 19 11 19 1.78
31811--31843 16 2.1 16 94 0 57 27 27 12 33 1.92
33519--33584 9 6.8 10 74 16 59 45 1 1 51 1.19
33509--33566 31 2.0 29 83 12 75 46 1 0 51 1.11
33528--33584 19 3.1 19 82 9 64 45 1 1 50 1.22
33690--33719 15 2.0 15 100 0 60 26 13 26 33 1.93
33895--33952 19 2.9 19 82 5 62 44 6 8 39 1.62
34162--34197 18 2.0 18 100 0 72 61 0 11 27 1.30
34817--34859 21 2.0 21 100 0 86 27 4 23 44 1.73
39086--39135 18 2.8 18 96 3 93 56 0 4 40 1.18
39081--39144 13 5.2 13 73 19 57 54 0 3 42 1.16
45400--45440 21 2.0 21 90 9 68 60 0 0 39 0.96
47330--47377 13 3.8 13 77 5 62 70 2 0 27 0.98
47328--47387 25 2.3 26 78 18 72 70 1 0 28 0.97
49440--49479 18 2.1 19 86 9 55 70 0 2 27 1.01
49439--49487 24 2.0 25 84 11 66 67 2 2 28 1.13
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
60600--60644 20 2.1 22 84 8 58 20 4 2 73 1.11
60600--60644 22 2.0 23 82 4 56 20 4 2 73 1.11
62620--62657 12 3.4 12 86 13 55 44 0 5 50 1.24
62605--62649 19 2.3 21 85 11 60 51 0 2 46 1.13
63048--63089 17 2.4 18 76 11 52 28 14 4 52 1.62
67950--67987 19 2.0 19 100 0 76 63 5 15 15 1.48
72418--72456 21 1.9 21 89 5 62 30 23 10 35 1.88
74822--74861 19 2.1 19 95 0 71 35 22 0 42 1.54
86774--86824 8 6.0 8 86 13 75 37 11 11 39 1.79
86776--86825 17 2.8 18 93 6 93 40 10 12 38 1.76
88088--88116 14 2.1 14 100 0 58 55 13 0 31 1.39
93734--93785 21 2.5 21 100 0 104 7 23 9 59 1.54
93714--93802 21 4.1 21 84 5 81 11 24 7 56 1.61
96162--96199 18 2.1 18 95 0 67 34 7 23 34 1.84
103558--103582 12 2.1 12 100 0 50 40 8 8 44 1.63
118653--118696 24 1.9 24 90 9 74 56 4 0 38 1.20
118651--118703 23 2.2 24 83 9 74 60 3 0 35 1.15
118725--118811 42 2.1 42 83 12 108 42 3 1 52 1.25
123799--123840 19 2.2 19 86 0 57 30 21 2 45 1.65
145861--145885 12 2.1 12 100 0 50 44 8 8 40 1.63
153244--153281 18 2.1 18 95 0 67 34 23 7 34 1.84
155655--155709 21 2.6 21 97 0 92 58 9 21 10 1.60
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Tables: 1
The End!