NC_034327.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034327.1 Echinacea purpurea plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151913
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
10580--10609 15 2.0 15 100 0 60 46 20 0 33 1.51
30081--30106 13 2.0 13 100 0 52 38 0 23 38 1.55
32143--32193 10 5.1 10 80 0 66 66 0 5 27 1.14
32141--32193 20 2.7 20 100 0 106 64 0 5 30 1.17
34818--34843 13 2.0 13 100 0 52 38 7 23 30 1.83
46145--46178 17 2.0 17 100 0 68 70 0 17 11 1.16
46308--46351 22 2.0 22 100 0 88 68 0 18 13 1.22
46665--46694 15 2.0 15 100 0 60 53 6 0 40 1.27
50760--50802 21 2.0 20 91 8 68 16 4 9 69 1.31
51503--51532 15 2.0 15 93 0 51 36 16 13 33 1.88
56294--56330 18 2.1 18 100 0 74 10 10 16 62 1.55
58394--58423 15 2.0 15 93 0 51 56 6 10 26 1.57
58618--58655 20 1.9 20 89 10 60 47 5 7 39 1.55
58640--58667 12 2.3 12 100 0 56 57 0 7 35 1.26
58623--58693 32 2.1 33 82 12 83 50 5 5 38 1.49
63042--63090 22 2.2 22 96 0 89 20 8 12 59 1.58
64589--64613 11 2.3 11 100 0 50 8 8 0 84 0.79
67465--67505 21 2.0 21 95 0 73 31 24 9 34 1.88
67931--67958 14 2.0 14 100 0 56 21 14 7 57 1.61
78426--78460 9 4.0 9 85 7 54 0 25 11 62 1.28
78428--78462 17 2.1 17 100 0 70 0 28 11 60 1.32
90878--90946 9 7.7 9 70 0 57 28 11 26 33 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
90884--90946 18 3.5 18 100 0 126 28 11 26 33 1.91
98523--98569 23 2.0 23 95 0 85 31 10 8 48 1.68
106575--106636 32 1.9 32 93 0 106 41 22 8 27 1.82
106922--106947 13 2.0 13 100 0 52 23 15 7 53 1.67
112073--112112 21 1.9 21 100 0 80 20 2 35 42 1.65
117926--117950 12 2.1 12 100 0 50 32 0 8 60 1.26
117937--117978 21 2.0 21 100 0 84 28 9 4 57 1.51
122980--123025 23 2.0 23 100 0 92 34 4 8 52 1.52
123776--123821 20 2.3 20 96 0 83 36 10 4 47 1.58
123999--124049 25 2.0 25 100 0 102 60 11 3 23 1.47
126780--126840 12 5.0 12 80 9 70 26 9 8 55 1.60
126785--126837 26 2.0 26 100 0 106 22 11 7 58 1.57
126785--126825 14 3.1 14 75 10 50 19 12 7 60 1.54
128569--128594 13 2.0 13 100 0 52 53 7 15 23 1.67
128880--128941 32 1.9 32 93 0 106 27 8 22 41 1.82
136947--136993 23 2.0 23 95 0 85 48 8 10 31 1.68
144570--144632 18 3.5 18 100 0 126 33 26 11 28 1.91
144570--144638 9 7.7 9 70 0 57 33 26 11 28 1.91
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Tables: 1
The End!