NC_034362.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034362.1 Thlaspi arvense chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153892
Tables: 1
This is table 1 of 1 ( 45 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1872--1916 23 2.0 23 100 0 90 48 4 11 35 1.59
1919--1945 13 2.1 13 100 0 54 14 22 14 48 1.81
4455--4483 11 2.5 12 94 5 51 79 0 10 10 0.94
4620--4651 15 2.1 15 100 0 64 46 0 0 53 1.00
4726--4778 24 2.2 25 93 6 99 43 5 7 43 1.56
7302--7354 26 2.0 26 100 0 106 32 7 22 37 1.82
7977--8039 2 34.0 2 81 15 82 50 0 0 49 1.00
7983--8049 31 2.2 31 91 2 109 49 1 0 49 1.10
9442--9540 16 6.6 16 72 19 79 38 4 2 55 1.30
9468--9551 41 2.0 41 97 0 159 40 4 2 52 1.35
9533--9560 12 2.3 12 100 0 56 50 0 7 42 1.30
9640--9687 21 2.2 21 82 14 53 37 8 2 52 1.44
9720--9759 18 2.2 18 95 0 71 62 2 10 25 1.39
9749--9785 18 2.1 18 89 0 56 72 5 10 10 1.25
27132--27156 12 2.1 12 100 0 50 44 16 8 32 1.76
31263--31302 9 4.1 9 82 17 53 12 20 0 67 1.22
31262--31303 21 2.0 21 100 0 84 14 19 0 66 1.25
31346--31376 15 2.1 15 93 0 53 35 9 0 54 1.33
32347--32376 15 2.0 15 100 0 60 53 6 6 33 1.53
35805--35855 15 3.2 16 78 10 52 58 1 3 35 1.28
35895--35949 23 2.3 24 81 12 69 50 0 12 36 1.41
41934--41967 17 2.0 17 100 0 68 11 11 11 64 1.50
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
46556--46863 158 2.0 152 87 3 445 28 18 20 31 1.96
56163--56188 13 2.0 13 100 0 52 23 0 7 69 1.14
62706--62732 13 2.1 13 100 0 54 55 14 7 22 1.64
63054--63107 26 2.1 26 100 0 108 46 7 11 35 1.67
65189--65216 14 2.0 14 100 0 56 35 21 7 35 1.81
67224--67263 21 1.9 21 89 0 62 32 22 10 35 1.87
71386--71415 15 2.0 15 100 0 60 46 6 0 46 1.29
84282--84320 20 2.0 20 89 0 60 33 10 12 43 1.77
88466--88561 24 4.3 22 90 6 124 12 20 11 55 1.68
88488--88579 21 4.2 21 87 4 112 13 21 8 56 1.63
88466--88579 42 2.6 43 83 8 140 13 21 9 55 1.66
90929--90986 18 3.4 17 88 6 75 32 6 22 37 1.81
107155--107215 32 1.9 32 96 0 113 40 24 9 24 1.85
113161--113190 10 3.0 10 90 0 51 30 16 10 43 1.81
113202--113239 19 2.0 19 100 0 76 26 15 10 47 1.78
117216--117241 13 2.0 13 100 0 52 53 7 7 30 1.57
130247--130307 32 1.9 32 96 0 113 24 9 24 40 1.85
146477--146522 18 2.6 18 92 0 74 34 23 8 32 1.86
146477--146534 18 3.4 17 88 6 66 37 22 6 32 1.81
148885--148997 24 5.1 21 88 4 102 54 9 22 13 1.67
148885--148977 21 4.3 21 85 8 116 55 8 22 12 1.64
148912--148997 24 3.7 24 92 4 133 53 11 20 13 1.71
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
153143--153181 20 2.0 20 89 0 60 43 12 10 33 1.77
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Tables: 1
The End!