NC_034368.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034368.1 Fritillaria thunbergii chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152155
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3295--3322 14 2.0 14 100 0 56 42 7 21 28 1.79
7434--7480 23 2.0 23 100 0 94 21 25 10 42 1.85
7594--7627 17 2.0 17 94 0 59 50 5 0 44 1.26
27853--27912 26 2.3 26 77 11 68 48 1 1 48 1.21
27871--27910 13 3.1 13 89 10 64 50 0 0 50 1.00
30278--30314 13 2.8 13 95 0 65 54 10 0 35 1.36
30270--30309 22 1.9 20 90 10 62 52 12 0 35 1.39
30281--30320 13 3.1 13 92 0 62 55 7 2 35 1.42
44203--44248 23 2.0 23 83 8 58 56 6 0 36 1.25
44385--44419 17 2.1 17 89 10 54 48 0 0 51 1.00
45999--46024 13 2.0 13 100 0 52 46 15 0 38 1.46
54273--54305 15 2.1 16 88 5 50 21 0 6 72 1.05
56527--56587 24 2.4 24 75 8 59 42 6 1 49 1.38
77003--77051 24 2.0 24 88 0 71 26 32 14 26 1.94
79449--79485 18 2.1 18 89 0 56 21 2 10 64 1.37
86729--86776 21 2.3 21 96 0 87 12 33 8 45 1.72
89069--89149 24 3.4 24 94 0 144 32 8 23 35 1.85
110608--110652 18 2.5 18 96 0 81 42 8 13 35 1.75
110669--110719 22 2.3 23 79 3 59 33 3 3 58 1.35
123030--123059 15 2.0 15 93 0 51 43 10 0 46 1.37
125032--125062 15 2.1 15 93 0 53 38 6 6 48 1.55
144897--144977 24 3.4 24 94 0 144 35 23 8 32 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
147270--147317 21 2.2 22 92 7 89 45 8 33 12 1.72
147277--147331 21 2.5 21 88 8 74 43 10 29 16 1.82
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Tables: 1
The End!