NC_034639.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034639.1 Eriobotrya japonica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159137
Tables: 1
This is table 1 of 1 ( 67 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
222--263 18 2.4 17 96 4 75 71 11 0 16 1.14
5089--5130 18 2.3 18 95 0 75 50 4 7 38 1.51
6905--6930 12 2.2 12 100 0 52 42 0 15 42 1.47
8474--8504 15 2.1 15 93 0 53 51 9 12 25 1.70
13185--13227 21 2.0 21 100 0 86 30 9 0 60 1.28
13324--13357 17 2.0 17 100 0 68 41 11 17 29 1.85
27854--27880 13 2.1 13 100 0 54 40 0 22 37 1.54
28806--28840 9 4.1 9 85 14 56 20 11 8 60 1.57
28806--28837 16 2.0 16 100 0 64 18 12 6 62 1.50
29392--29443 26 2.0 26 100 0 104 34 15 7 42 1.75
30423--30458 18 2.0 18 100 0 72 27 16 0 55 1.42
33169--33197 14 2.1 14 100 0 58 20 31 6 41 1.79
33812--33847 18 2.0 18 100 0 72 44 0 22 33 1.53
38386--38423 19 2.0 19 100 0 76 63 0 5 31 1.17
38512--38536 12 2.1 12 100 0 50 60 8 0 32 1.26
38617--38647 13 2.4 13 100 0 62 41 6 19 32 1.77
48916--48950 18 2.0 18 88 5 54 40 8 11 40 1.72
48968--49030 19 3.1 19 81 16 81 42 11 4 41 1.61
48968--49039 23 3.4 22 87 10 98 45 9 4 40 1.56
49255--49279 12 2.1 12 100 0 50 48 0 0 52 1.00
49434--49468 17 2.1 17 100 0 70 11 0 11 77 1.00
49449--49496 22 2.1 22 88 3 78 20 0 12 66 1.24
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
52273--52304 16 2.0 16 93 0 55 21 12 9 56 1.64
53752--53790 18 2.4 16 87 12 53 51 0 12 35 1.40
53830--53862 9 3.7 9 88 11 50 45 6 0 48 1.27
57335--57364 14 2.1 14 93 0 51 20 13 10 56 1.65
59182--59206 12 2.1 12 100 0 50 60 0 8 32 1.26
61752--61794 10 4.0 10 77 16 50 51 6 20 20 1.71
61756--61801 23 2.0 23 100 0 92 52 4 21 21 1.64
61808--61848 11 3.6 12 74 12 50 36 0 0 63 0.95
61818--61870 19 2.8 19 88 2 72 43 1 1 52 1.23
66117--66147 16 1.9 16 100 0 62 41 0 6 51 1.27
67779--67820 21 2.0 21 100 0 84 61 9 28 0 1.27
68217--68252 18 2.1 17 94 5 63 38 5 8 47 1.57
70149--70200 16 3.4 15 84 10 61 32 5 1 59 1.32
70616--70671 28 2.0 28 100 0 112 50 3 3 42 1.37
70772--70810 21 1.9 21 89 5 62 33 20 10 35 1.86
72656--72697 12 3.5 12 80 0 57 54 0 14 30 1.40
72651--72744 20 4.3 22 92 8 133 54 0 10 35 1.35
72661--72746 20 4.1 20 93 6 136 54 0 10 34 1.35
77328--77363 18 2.0 18 94 0 63 41 5 11 41 1.64
84684--84718 18 1.9 18 88 0 52 74 5 0 20 1.02
87904--87943 20 2.0 20 95 0 71 37 10 2 50 1.50
92108--92175 21 3.2 21 82 0 82 11 22 7 58 1.57
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
94530--94581 18 2.9 18 94 0 95 32 7 28 30 1.85
97540--97580 21 2.0 20 95 4 73 53 4 0 41 1.22
102017--102055 15 2.9 14 88 11 55 17 10 0 71 1.12
102059--102084 12 2.2 12 100 0 52 7 7 0 84 0.77
102569--102603 18 1.9 18 88 11 54 28 8 8 54 1.60
110778--110841 31 2.1 31 93 0 110 37 26 9 26 1.87
114167--114197 12 2.7 12 95 5 55 25 16 0 58 1.38
116587--116619 16 2.1 16 94 0 57 9 0 0 90 0.44
117041--117150 20 5.6 20 95 4 197 47 4 0 48 1.22
117041--117150 39 2.8 39 97 1 202 47 4 0 48 1.22
117187--117226 20 2.0 20 100 0 80 55 5 5 35 1.44
118263--118309 16 3.2 16 72 27 59 68 4 6 21 1.30
118255--118317 27 2.4 27 94 2 110 66 4 6 22 1.33
118268--118327 27 2.2 27 90 0 93 68 3 6 21 1.28
131437--131470 15 2.3 15 89 0 50 0 23 5 70 1.09
135439--135502 31 2.1 31 93 0 110 26 9 26 37 1.87
143677--143711 18 1.9 18 88 11 54 54 8 8 28 1.60
144196--144221 12 2.2 12 100 0 52 84 0 7 7 0.77
144225--144263 15 2.9 14 88 11 55 71 0 10 17 1.12
148700--148740 21 2.0 20 95 4 73 41 0 4 53 1.22
151699--151750 18 2.9 18 94 0 95 30 28 7 32 1.85
154106--154194 21 4.1 21 81 5 81 56 7 23 12 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
158337--158376 20 2.0 20 95 0 71 50 2 10 37 1.50
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!