NC_034645.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034645.1 Glehnia littoralis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 147477
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7081--7108 14 2.0 14 100 0 56 35 21 0 42 1.53
10838--10862 13 1.9 13 100 0 50 44 16 0 40 1.47
21681--21777 49 2.0 49 87 0 140 29 17 19 32 1.95
28716--28746 14 2.2 14 100 0 62 35 0 6 58 1.24
48320--48352 11 3.0 11 100 0 66 36 9 0 54 1.32
48325--48365 13 3.3 13 86 6 50 41 7 2 48 1.44
48321--48368 11 4.2 11 87 10 60 39 8 4 47 1.53
63427--63453 14 1.9 14 100 0 54 40 14 7 37 1.74
64991--65034 11 4.1 11 85 5 63 43 2 0 54 1.12
69237--69282 24 1.9 24 90 0 74 52 4 4 39 1.41
75667--75703 19 1.9 19 94 0 65 54 13 8 24 1.66
83216--83257 14 3.1 14 82 6 50 30 2 2 64 1.19
89848--89915 21 3.2 21 77 8 75 11 22 8 57 1.61
91017--91060 15 2.9 15 93 0 70 27 34 13 25 1.93
92280--92345 18 3.7 18 95 0 114 28 6 28 36 1.81
92280--92344 9 7.2 9 73 0 58 29 6 29 35 1.82
103410--103470 20 3.0 20 100 0 122 50 14 29 4 1.64
108096--108161 32 2.1 32 94 0 114 40 22 9 27 1.84
114165--114218 18 3.2 18 71 28 64 37 5 9 48 1.59
114478--114563 40 2.4 34 76 23 104 36 3 4 55 1.37
114490--114565 40 1.9 40 100 0 152 40 2 5 51 1.38
119592--119621 12 2.5 12 94 0 51 46 0 6 46 1.29
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
127711--127747 9 4.1 9 96 0 56 27 16 0 56 1.40
132813--132878 32 2.1 32 94 0 114 27 9 22 40 1.84
137504--137564 20 3.0 20 100 0 122 4 29 14 50 1.64
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!