NC_034660.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034660.1 Lysionotus pauciflorus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153856
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5194--5331 70 2.0 69 97 2 260 30 20 23 26 1.98
6524--6840 160 2.0 160 100 0 634 40 13 10 35 1.79
7209--7295 41 2.1 41 97 0 165 33 22 8 35 1.84
8982--9017 17 2.2 16 95 5 63 33 0 0 66 0.92
13557--13695 67 2.1 67 100 0 278 30 24 19 25 1.98
14444--14489 23 2.0 23 100 0 92 47 13 21 17 1.81
28731--28781 13 3.9 13 100 0 102 31 13 0 54 1.39
30136--30182 23 2.0 23 95 0 85 34 14 8 42 1.77
31643--31676 17 2.0 17 94 0 59 52 8 23 14 1.69
31755--31788 17 2.0 17 94 0 59 52 8 23 14 1.69
31620--31837 112 1.9 112 100 0 436 35 9 26 28 1.88
36507--36645 69 2.0 69 100 0 278 30 18 22 28 1.97
37109--37143 18 1.9 18 88 0 52 51 0 11 37 1.38
46081--46141 28 2.2 28 100 0 122 37 3 13 45 1.59
48016--48042 13 2.1 13 100 0 54 44 0 0 55 0.99
55923--55968 18 2.6 18 93 3 76 21 17 0 60 1.35
57798--58017 110 2.0 110 100 0 440 34 20 15 30 1.93
76047--76155 49 2.3 49 96 3 204 27 13 22 36 1.92
80470--80518 24 2.0 24 88 0 71 30 28 14 26 1.95
92294--92371 18 4.3 18 98 0 147 28 11 28 32 1.92
100182--100219 17 2.2 16 86 13 58 28 0 23 47 1.52
108140--108200 31 2.0 31 93 0 104 40 21 9 27 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112861--112891 16 1.9 16 93 0 53 38 0 6 54 1.26
112907--113344 218 2.0 218 97 1 835 42 9 10 38 1.71
115450--115491 21 2.0 21 100 0 84 28 9 14 47 1.75
123671--123712 19 2.2 19 91 0 66 47 7 11 33 1.68
130744--130804 31 2.0 31 93 0 104 27 9 21 40 1.85
138725--138760 17 2.1 18 94 5 65 50 22 0 27 1.50
146573--146650 18 4.3 18 98 0 147 32 28 11 28 1.92
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Tables: 1
The End!