NC_034693.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034693.1 Scutellaria lateriflora plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152283
Tables: 1
This is table 1 of 1 ( 22 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6815--6843 15 1.9 15 100 0 58 48 0 24 27 1.51
6952--6984 16 2.1 16 88 11 50 45 6 6 42 1.53
15650--15689 19 2.1 19 90 9 64 42 10 5 42 1.60
29606--29645 20 2.0 20 100 0 80 35 10 20 35 1.86
30109--30134 13 2.0 13 100 0 52 38 7 15 38 1.76
46854--46889 12 3.0 12 91 0 54 41 16 2 38 1.63
59472--59516 16 2.8 16 100 0 90 24 20 20 35 1.96
60569--60613 21 2.1 21 91 0 72 28 22 15 33 1.95
64456--64492 19 1.9 19 88 0 56 24 27 13 35 1.93
68529--68569 21 2.0 21 100 0 82 29 24 9 36 1.87
89119--89173 24 2.5 22 85 8 67 14 23 12 49 1.78
89141--89208 21 3.2 21 77 8 75 11 22 10 55 1.65
91543--91584 18 2.3 18 95 0 75 30 9 26 33 1.88
107229--107288 31 1.9 31 93 0 102 38 23 10 28 1.87
111197--111235 20 2.0 20 85 10 53 56 23 0 20 1.42
113026--113052 13 2.1 13 100 0 54 44 7 7 40 1.60
125451--125493 14 3.1 14 86 3 61 0 18 2 79 0.85
129336--129395 31 1.9 31 93 0 102 28 10 23 38 1.87
145040--145081 18 2.3 18 95 0 75 33 26 9 30 1.88
145040--145093 18 3.2 17 87 7 58 35 24 9 31 1.87
147434--147487 21 2.6 21 82 11 74 59 11 20 9 1.59
147416--147505 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!