NC_034702.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034702.1 Hydrastis canadensis plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160000
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
15459--15493 18 1.9 18 94 0 61 48 11 11 28 1.74
28282--28322 20 2.0 21 90 4 66 26 12 29 31 1.92
47985--48029 17 2.6 17 78 0 54 48 8 11 31 1.69
48282--48317 17 2.1 17 100 0 72 47 11 11 30 1.74
49891--49937 15 2.9 15 90 9 67 25 6 0 68 1.13
54465--54495 16 1.9 16 100 0 62 32 9 6 51 1.60
58939--58963 13 1.9 13 100 0 50 40 0 20 40 1.52
60633--60673 14 2.8 15 85 14 59 51 12 12 24 1.73
74031--74071 19 2.2 19 86 8 57 34 12 0 53 1.38
82654--82700 24 2.0 24 91 0 76 23 31 17 27 1.96
85506--85540 15 2.2 17 90 10 56 22 2 5 68 1.24
86740--86783 21 2.1 21 86 0 61 22 22 9 45 1.80
87300--87326 13 2.1 13 100 0 54 48 14 7 29 1.71
92384--92452 21 3.3 21 93 2 113 10 26 11 52 1.69
94824--94920 18 5.6 18 95 3 164 32 6 25 35 1.81
94836--94912 9 8.6 9 77 0 82 33 6 27 32 1.82
115266--115300 12 2.8 12 91 4 52 71 0 28 0 0.86
115277--115307 15 2.1 15 93 0 53 70 0 29 0 0.87
117073--117107 15 2.3 15 95 0 61 54 14 0 31 1.40
117719--117791 30 2.4 30 81 0 83 41 17 20 20 1.91
123585--123648 4 17.0 4 78 12 55 59 0 0 40 0.97
123586--123649 13 5.1 13 76 14 71 60 0 0 39 0.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
123592--123669 24 3.5 22 80 18 81 61 1 0 37 1.04
123588--123651 26 2.5 26 94 5 112 60 0 0 39 0.97
130035--130064 15 2.0 15 93 0 51 33 3 20 43 1.68
132929--132969 21 2.0 21 95 0 73 34 7 4 53 1.50
152220--152297 9 8.7 9 76 0 84 33 26 6 33 1.82
152213--152309 18 5.6 18 95 3 164 35 25 6 32 1.81
154681--154749 21 3.3 21 93 2 113 52 11 26 10 1.69
159807--159833 13 2.1 13 100 0 54 29 7 14 48 1.71
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Tables: 1
The End!