NC_034802.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034802.1 Saccharum spontaneum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 141168
Tables: 1
This is table 1 of 1 ( 41 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5987--6032 16 2.9 16 93 3 76 56 13 4 26 1.55
6854--6880 13 2.1 13 100 0 54 51 22 0 25 1.48
14121--14145 12 2.1 12 100 0 50 36 16 16 32 1.90
16268--16317 25 2.0 25 96 0 91 46 8 4 42 1.52
16268--16315 13 3.8 13 80 5 62 45 8 4 41 1.53
16371--16498 67 1.9 67 88 0 193 29 17 24 28 1.97
19120--19148 14 2.0 15 93 6 51 75 0 17 6 1.01
19300--19331 16 2.0 16 100 0 64 18 12 6 62 1.50
20603--20642 20 2.0 20 100 0 80 35 10 10 45 1.71
27384--27424 21 2.0 21 100 0 82 26 29 14 29 1.95
28277--28305 15 1.9 15 100 0 58 27 34 17 20 1.95
29350--29454 21 5.0 21 85 0 138 40 14 33 12 1.83
29351--29454 42 2.5 42 95 0 181 39 14 33 12 1.84
29512--29602 21 4.3 21 73 5 85 40 14 25 19 1.89
29506--29602 42 2.3 42 87 3 133 40 13 27 18 1.88
29525--29614 21 4.3 21 72 10 85 38 14 27 18 1.90
29696--29778 33 2.5 32 79 11 96 40 10 32 15 1.82
29762--29796 12 2.9 12 100 0 70 42 17 31 8 1.79
32141--32170 11 2.7 11 100 0 60 30 0 16 53 1.44
35236--35267 16 2.0 16 93 0 55 28 0 0 71 0.86
35508--35535 14 2.0 14 100 0 56 57 7 7 28 1.52
45929--46006 26 3.0 26 100 0 156 15 38 7 38 1.76
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
48467--48501 17 2.1 17 100 0 70 60 11 17 11 1.59
57210--57240 15 2.1 15 100 0 62 19 32 6 41 1.77
59594--59619 13 2.0 13 100 0 52 7 30 7 53 1.57
68181--68305 21 6.0 21 85 3 180 36 26 5 31 1.80
68181--68302 63 1.9 63 91 3 201 36 27 4 31 1.78
68593--68651 21 2.8 21 75 10 66 49 22 10 18 1.77
70948--70994 17 2.7 17 86 3 58 46 8 8 36 1.65
70965--70998 17 2.0 17 100 0 68 52 5 11 29 1.61
79027--79067 18 2.3 18 86 0 55 9 14 2 73 1.19
94592--94624 14 2.4 14 94 0 57 27 15 3 54 1.55
94617--94678 20 3.0 21 95 2 108 37 4 8 50 1.54
94618--94681 21 3.1 21 95 2 112 35 4 7 51 1.52
105705--105741 18 2.1 18 100 0 74 21 5 10 62 1.48
108746--108783 10 3.7 10 86 6 58 26 15 10 47 1.78
108741--108782 21 2.0 21 100 0 84 28 14 9 47 1.75
118474--118510 18 2.1 18 100 0 74 62 10 5 21 1.48
129534--129597 21 3.1 21 93 4 112 51 7 4 35 1.52
129538--129598 20 3.0 20 95 2 104 50 6 4 37 1.50
129591--129623 14 2.4 14 94 0 57 54 3 15 27 1.55
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Tables: 1
The End!