NC_035066.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035066.1 Taxus baccata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 128653
Tables: 1
This is table 1 of 1 ( 81 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
20330--20359 15 2.0 15 100 0 60 40 0 26 33 1.57
24769--24845 26 2.9 26 88 1 118 29 15 22 32 1.95
25194--25234 2 21.5 2 85 9 59 48 0 2 48 1.14
25191--25235 13 3.3 13 82 11 63 46 0 2 51 1.13
25194--25234 9 4.3 10 81 12 59 48 0 2 48 1.14
29660--29691 16 2.0 16 100 0 64 50 6 6 37 1.53
34110--34144 15 2.2 16 90 5 54 42 5 28 22 1.76
41112--41163 26 2.0 26 96 0 95 40 15 17 26 1.89
52533--52604 24 3.0 24 100 0 144 62 4 20 12 1.46
53749--53792 21 2.1 21 100 0 88 56 4 18 20 1.58
53795--53929 60 2.2 60 81 5 182 45 13 15 25 1.83
54086--54121 18 2.0 18 100 0 72 44 5 11 38 1.63
55010--55409 12 33.9 11 80 10 286 70 2 26 0 1.03
55010--55407 18 22.1 18 88 0 465 70 2 26 0 1.03
55408--55441 12 2.8 12 90 0 59 76 0 17 5 0.98
55006--55445 15 28.7 15 83 10 346 70 2 26 0 1.04
56214--56249 17 2.1 17 90 10 56 50 0 0 50 1.00
56213--56263 13 4.1 13 83 14 63 45 1 0 52 1.12
56225--56270 15 3.1 16 82 17 55 43 4 0 52 1.21
57172--57217 24 1.9 24 90 0 74 54 8 8 28 1.61
57203--57258 27 2.1 27 86 6 78 41 16 17 25 1.89
60048--60082 17 2.1 17 100 0 70 40 0 20 40 1.52
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69558--69582 12 2.1 12 100 0 50 8 8 0 84 0.79
72290--72330 18 2.3 18 95 4 75 14 9 4 70 1.30
72633--72781 30 5.0 30 96 0 271 39 22 8 30 1.83
73916--73955 20 2.0 20 95 0 71 50 7 5 37 1.53
78177--78336 18 8.8 18 91 0 212 9 18 9 63 1.51
79377--79431 18 3.1 18 100 0 110 32 10 5 50 1.60
80528--80555 14 2.0 14 100 0 56 42 7 14 35 1.73
81049--81242 68 2.9 68 97 0 361 46 9 14 29 1.76
81268--81307 20 2.0 20 90 0 62 37 2 20 40 1.66
81273--81316 20 2.2 20 84 8 54 43 2 13 40 1.57
81348--81413 29 2.3 29 91 0 105 36 18 4 40 1.71
81476--81504 14 2.1 14 100 0 58 72 0 6 20 1.07
81653--81688 18 2.0 18 100 0 72 55 5 0 38 1.23
81712--81751 20 2.0 21 90 5 64 35 10 0 55 1.34
81713--81758 20 2.2 20 84 3 56 39 10 0 50 1.38
82477--82539 27 2.3 27 86 0 90 57 9 17 15 1.65
83062--83097 18 2.0 18 100 0 72 44 5 5 44 1.50
83307--83438 66 2.1 61 88 12 191 43 10 11 34 1.75
83488--83523 12 3.0 12 95 0 63 8 11 16 63 1.49
83592--83715 66 1.9 66 100 0 248 42 10 9 37 1.72
89689--89731 19 2.3 19 95 0 77 37 9 6 46 1.63
91076--91101 12 2.2 12 100 0 52 15 0 0 84 0.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92177--92208 14 2.3 14 94 0 55 37 0 0 62 0.95
93936--93978 10 4.3 10 96 0 77 30 11 9 48 1.71
94843--94916 26 2.8 26 80 10 78 32 4 1 62 1.22
94856--94916 26 2.2 28 85 5 81 31 4 0 63 1.15
95099--95123 12 2.1 12 100 0 50 40 0 24 36 1.55
97079--97241 47 3.5 47 100 0 326 36 18 7 37 1.79
97410--97639 25 9.2 25 100 0 460 56 7 3 32 1.46
98515--98541 13 2.1 13 100 0 54 85 0 7 7 0.75
112734--112775 21 2.0 21 100 0 84 38 14 14 33 1.86
113488--113549 32 1.9 32 93 6 108 33 11 9 45 1.73
117783--117823 20 2.0 20 95 0 73 24 29 41 4 1.75
118749--118914 39 4.2 39 76 17 118 3 22 3 71 1.16
118779--118839 14 4.5 13 84 10 61 0 27 1 70 0.97
118791--118878 17 5.1 17 71 16 56 2 25 2 70 1.10
118853--118902 24 2.1 24 88 0 73 6 14 4 76 1.13
118874--118917 15 2.9 15 86 6 54 4 13 2 79 0.98
118881--118925 15 2.9 15 83 3 54 2 17 2 77 0.97
118920--119009 18 5.0 18 97 0 162 22 30 0 47 1.51
119408--119507 21 4.5 21 69 12 58 2 25 7 66 1.28
119730--119768 15 2.6 15 95 0 69 10 25 5 58 1.51
119745--119873 15 8.6 15 95 0 222 12 32 0 54 1.43
119922--119993 9 8.0 9 82 11 94 30 20 23 25 1.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
119923--119992 18 3.9 18 92 3 106 30 20 24 25 1.99
119922--120011 27 3.3 27 76 11 94 30 20 24 25 1.99
119967--120014 18 2.7 18 93 0 78 27 18 25 29 1.98
120245--120372 66 1.9 66 90 0 202 18 25 13 42 1.87
121248--121307 21 2.9 21 89 0 84 26 16 16 40 1.90
122151--122181 6 5.2 6 96 0 53 0 45 0 54 0.99
122173--122218 6 7.7 6 97 0 83 0 45 0 54 0.99
122128--122218 12 7.3 12 82 11 69 2 43 1 52 1.20
122128--122218 18 4.9 18 79 15 78 2 43 1 52 1.20
123624--123677 21 2.6 21 100 0 108 11 22 3 62 1.43
124546--124603 30 1.9 30 100 0 116 44 5 27 22 1.74
124679--124731 26 2.0 27 92 7 92 45 3 22 28 1.70
124647--125008 178 2.0 178 100 0 724 39 6 14 39 1.72
124857--124909 26 2.0 27 92 7 92 45 3 22 28 1.70
124954--125102 74 2.0 75 92 1 246 35 8 9 46 1.67
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Tables: 1
The End!