NC_035238.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035238.1 Litchi chinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 162524
Tables: 1
This is table 1 of 1 ( 33 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
197--238 19 2.3 19 80 15 52 52 16 7 23 1.68
3619--3660 20 2.1 20 100 0 84 40 9 14 35 1.78
15045--15080 14 2.5 15 95 4 65 22 5 11 61 1.50
30298--30334 17 2.2 17 90 0 56 59 5 24 10 1.52
38524--38576 19 2.9 19 81 15 67 66 0 5 28 1.15
38527--38611 25 3.5 24 76 9 82 64 0 4 30 1.14
38533--38606 13 5.8 13 78 16 59 64 0 4 31 1.12
49283--49323 15 2.7 15 88 0 55 41 21 17 19 1.90
53764--53801 19 2.0 19 100 0 76 52 5 21 21 1.66
57441--57486 23 2.0 23 100 0 92 30 17 4 47 1.67
61675--61713 19 2.1 19 95 0 69 58 2 7 30 1.39
61850--61897 17 2.7 19 78 15 57 70 2 16 10 1.24
69944--69988 15 3.0 15 96 0 81 0 24 0 75 0.80
79685--79738 17 3.2 17 100 0 108 24 16 5 53 1.64
80058--80119 31 2.0 31 96 0 115 35 11 16 37 1.84
83648--83672 13 1.9 13 100 0 50 64 0 4 32 1.12
92103--92154 21 2.5 21 93 0 86 7 23 11 57 1.59
94525--94584 18 3.3 18 97 0 111 26 13 26 33 1.93
96897--96921 12 2.1 12 100 0 50 36 16 8 40 1.77
102853--102890 18 2.1 18 95 0 67 21 10 7 60 1.54
107420--107494 38 2.0 37 94 2 132 33 22 24 20 1.97
112038--112082 22 2.1 22 95 4 83 40 26 20 13 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
118333--118364 16 2.0 16 100 0 64 62 6 12 18 1.50
118696--118747 26 2.0 26 85 7 70 44 7 26 21 1.79
121423--121471 24 2.0 24 96 0 89 51 10 4 34 1.55
127330--127369 20 2.0 20 100 0 80 50 10 20 20 1.76
131346--131386 21 2.0 21 100 0 82 39 0 24 36 1.56
136193--136237 22 2.1 22 95 4 83 13 20 26 40 1.89
140781--140855 38 2.0 37 94 2 132 20 24 22 33 1.97
145385--145422 18 2.1 18 95 0 67 60 7 10 21 1.54
151354--151378 12 2.1 12 100 0 50 40 8 16 36 1.77
153691--153750 18 3.3 18 97 0 111 33 26 13 26 1.93
156121--156174 21 2.6 21 90 0 90 59 11 22 7 1.56
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Tables: 1
The End!