NC_035370.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035370.1 Lobelia chinensis plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 164396
Tables: 1
This is table 1 of 1 ( 72 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4107--4195 37 2.4 37 88 3 135 29 11 16 42 1.83
32793--32834 21 2.0 21 100 0 84 38 19 9 33 1.84
32870--33071 72 3.0 68 87 9 306 27 23 23 26 2.00
32943--33070 63 2.0 63 96 0 238 28 21 23 25 1.99
33673--33715 21 2.0 21 86 8 61 23 2 11 62 1.40
33865--33969 32 3.1 33 77 16 126 44 4 12 38 1.63
33865--33969 35 3.1 34 78 12 135 44 4 12 38 1.63
36649--36684 15 2.4 15 90 0 54 30 5 19 44 1.73
52078--52130 26 2.0 26 92 0 88 28 13 5 52 1.62
56944--57053 57 1.9 56 85 7 150 34 16 18 30 1.93
63340--63373 17 2.1 16 89 10 52 29 0 23 47 1.52
65336--65375 15 2.7 15 88 0 62 7 20 0 72 1.08
66087--66148 21 3.0 21 92 0 106 29 27 11 32 1.91
66399--66472 30 2.5 30 82 4 80 48 13 27 10 1.75
66651--66688 18 2.1 18 95 0 67 10 10 7 71 1.32
68416--68450 16 2.2 16 90 5 54 71 0 22 5 1.07
84361--84540 51 3.5 51 97 0 333 47 11 16 24 1.80
87379--87535 84 1.9 84 98 0 305 32 17 16 33 1.92
87828--87868 21 2.0 21 95 0 73 24 9 14 51 1.72
87960--88023 21 3.0 21 97 0 119 45 6 29 18 1.74
90153--90200 24 2.0 24 95 0 87 29 20 31 18 1.97
106711--106771 31 1.9 32 90 3 97 57 9 3 29 1.47
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
107830--107866 12 3.1 12 88 0 56 59 2 37 0 1.12
107845--107875 12 2.6 12 94 0 53 64 3 32 0 1.09
108458--108608 18 8.2 18 89 4 230 59 7 31 0 1.31
108610--108686 18 4.3 18 93 0 127 36 24 27 11 1.90
108739--108822 30 2.8 30 96 0 159 50 15 17 16 1.79
109782--109866 12 7.1 12 94 0 152 64 8 27 0 1.21
110538--110586 21 2.3 21 96 0 89 57 10 18 14 1.65
111791--111844 15 3.8 15 76 14 60 40 18 9 31 1.82
111797--111856 27 2.2 27 82 5 68 43 16 11 28 1.83
111817--111971 42 3.7 41 74 8 150 36 14 18 30 1.91
111779--112004 84 2.7 83 74 6 197 36 16 16 30 1.91
112140--112226 24 3.6 24 92 0 138 47 5 18 28 1.71
112265--112318 18 3.0 18 86 7 83 53 18 16 11 1.72
112384--112416 15 2.2 15 94 0 57 39 9 27 24 1.85
112510--112536 3 9.0 3 100 0 54 66 0 33 0 0.92
112564--112605 15 2.8 15 100 0 84 61 11 21 4 1.48
112618--112646 15 1.9 15 100 0 58 41 27 17 13 1.87
114013--114131 57 2.1 57 98 0 229 52 10 16 20 1.74
125597--125640 20 2.2 20 88 8 63 13 0 31 54 1.39
132726--132844 57 2.1 57 98 0 229 20 16 10 52 1.74
134211--134239 15 1.9 15 100 0 58 13 17 27 41 1.87
134252--134293 15 2.8 15 100 0 84 4 21 11 61 1.48
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
134321--134347 3 9.0 3 100 0 54 0 33 0 66 0.92
134441--134473 15 2.2 15 94 0 57 24 27 9 39 1.85
134539--134592 18 3.0 18 86 7 83 11 16 18 53 1.72
134631--134717 24 3.6 24 92 0 138 28 18 5 47 1.71
134872--134920 15 3.3 14 86 11 62 24 16 16 42 1.87
134886--135040 42 3.7 41 74 8 150 30 18 14 36 1.91
134966--135005 15 2.7 14 85 11 53 30 22 12 35 1.91
134985--135024 12 2.9 15 75 21 50 27 22 10 40 1.86
135013--135066 15 3.8 15 76 14 60 31 9 18 40 1.82
135013--135066 27 2.0 27 88 0 81 31 9 18 40 1.82
134860--135078 84 2.6 84 73 11 198 30 15 16 36 1.91
136271--136319 21 2.3 21 96 0 89 14 18 10 57 1.65
136991--137075 12 7.1 12 94 0 152 0 27 8 64 1.21
138035--138118 30 2.8 30 96 0 159 16 17 15 50 1.79
138171--138247 18 4.3 18 93 0 127 11 27 24 36 1.90
138225--138383 36 4.2 39 86 4 89 1 30 10 56 1.44
138249--138399 18 8.2 18 89 4 230 0 31 7 59 1.31
138305--138417 36 3.1 36 87 0 82 2 33 7 55 1.43
138249--138417 54 3.1 54 85 2 149 1 31 9 56 1.41
138982--139024 12 3.6 12 90 0 59 0 34 4 60 1.17
140017--140051 17 2.1 17 89 5 54 14 5 5 74 1.19
140086--140146 31 1.9 32 90 3 97 29 3 9 57 1.47
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
140148--140193 19 2.3 21 75 14 53 30 4 4 60 1.35
156657--156704 24 2.0 24 95 0 87 18 31 20 29 1.97
158834--158897 21 3.0 21 97 0 119 18 29 6 45 1.74
158989--159029 21 2.0 21 95 0 73 51 14 9 24 1.72
159322--159478 84 1.9 84 98 0 305 33 16 17 32 1.92
162317--162496 51 3.5 51 97 0 333 24 16 11 47 1.80
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Tables: 1
The End!