NC_035414.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035414.1 Viscum coloratum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 128744
Tables: 1
This is table 1 of 1 ( 79 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3235--3264 15 2.0 15 100 0 60 20 13 6 60 1.55
4206--4256 6 8.5 6 77 16 52 23 0 0 76 0.79
4194--4260 8 8.8 8 77 11 61 26 0 0 73 0.84
4199--4248 12 4.2 12 80 10 57 22 0 0 78 0.76
4189--4256 25 3.0 23 83 10 79 23 0 1 75 0.89
4369--4413 15 3.0 15 90 0 63 28 22 2 46 1.63
4440--4468 13 2.2 13 100 0 58 41 20 0 37 1.53
5388--5438 16 3.2 16 86 10 77 60 0 1 37 1.08
5392--5457 10 6.3 10 80 13 62 63 0 1 34 1.04
5425--5492 11 6.0 11 80 15 61 64 2 0 32 1.08
5409--5494 36 2.4 35 81 15 95 62 2 0 34 1.08
5929--5977 17 2.8 18 90 9 68 48 0 4 46 1.20
6165--6190 13 2.0 13 100 0 52 53 0 0 46 1.00
7076--7101 13 2.0 13 100 0 52 38 23 7 30 1.83
7879--7912 17 2.0 17 88 0 50 26 17 0 55 1.42
7950--7985 9 4.0 9 85 0 54 44 0 0 55 0.99
7945--7993 15 3.1 15 78 16 53 46 0 0 53 1.00
7998--8198 11 17.5 11 71 19 65 63 0 1 34 1.06
7991--8066 25 3.3 23 78 14 75 73 0 1 25 0.91
7994--8082 16 5.2 16 76 10 79 71 0 1 26 0.92
7989--8078 21 4.6 20 83 12 107 71 0 1 27 0.94
7988--8090 14 7.5 14 75 18 74 70 0 0 28 0.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8095--8133 12 3.0 12 82 17 51 51 0 0 48 1.00
8079--8197 34 4.0 31 71 22 94 57 0 2 40 1.12
8044--8200 56 2.9 56 79 12 168 59 0 2 37 1.11
8003--8199 44 4.6 43 75 13 138 62 0 2 34 1.08
8134--8199 11 5.9 11 81 10 71 59 0 6 34 1.22
10833--10873 14 2.8 15 88 7 66 60 9 0 29 1.28
11525--11555 15 2.1 15 100 0 62 74 0 6 19 1.03
20107--20142 17 2.2 16 90 9 56 13 33 0 52 1.41
25905--25953 16 3.1 16 90 0 71 57 0 6 36 1.24
25912--25961 16 3.1 16 91 0 73 56 0 12 32 1.36
26000--26106 54 2.0 54 96 0 196 26 17 22 33 1.96
27064--27093 15 2.0 15 100 0 60 60 0 13 26 1.34
27409--27447 19 2.1 19 100 0 78 41 10 10 38 1.73
29068--29118 8 5.8 9 77 13 52 45 7 1 45 1.44
29068--29119 25 2.0 26 92 7 88 46 7 1 44 1.43
40872--40897 13 2.0 13 100 0 52 92 0 7 0 0.39
42779--42824 17 2.7 17 86 6 67 54 4 6 34 1.46
44504--44533 13 2.3 13 100 0 60 43 6 20 30 1.77
46594--46632 21 1.9 20 89 5 60 64 0 7 28 1.21
46622--46658 16 2.2 17 86 13 51 72 0 10 16 1.10
56702--56745 18 2.4 19 84 3 54 72 0 0 27 0.85
56703--56745 19 2.3 18 84 4 50 74 0 0 25 0.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
56702--56747 16 3.0 16 81 18 62 71 0 0 28 0.86
57898--57945 19 2.6 18 83 6 60 41 6 2 50 1.39
57913--57948 18 1.9 19 88 5 56 41 5 0 52 1.24
61357--61402 19 2.4 20 79 17 53 30 0 0 69 0.89
61401--61459 5 12.0 5 75 10 50 66 0 0 33 0.92
61383--61419 13 3.1 12 88 11 58 43 0 0 56 0.99
61412--61463 10 5.1 10 88 4 68 71 0 0 28 0.87
61413--61462 16 3.1 16 81 18 59 74 0 0 26 0.83
61416--61468 5 10.2 5 81 6 61 73 0 1 24 0.93
62412--62453 14 2.7 15 82 14 50 26 4 0 69 1.08
62440--62510 10 6.6 11 77 22 64 39 0 0 60 0.97
62432--62507 6 12.0 6 74 20 57 36 1 0 61 1.04
62429--62510 13 6.4 13 76 22 84 37 1 0 60 1.04
62440--62518 19 4.1 19 87 6 106 41 0 0 58 0.98
65375--65404 15 2.0 15 100 0 60 53 13 13 20 1.72
76532--76561 15 2.0 15 100 0 60 60 13 0 26 1.34
79340--79391 18 2.9 18 75 11 52 17 26 13 42 1.86
81764--81819 18 3.1 18 100 0 112 33 5 39 21 1.76
87218--87252 10 3.5 10 100 0 70 31 0 8 60 1.27
91780--91810 15 2.0 16 93 6 55 38 22 0 38 1.54
96760--96788 13 2.2 13 100 0 58 51 10 0 37 1.36
97258--97282 10 2.5 10 100 0 50 68 0 0 32 0.90
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
97291--97322 16 2.0 16 100 0 64 62 0 12 25 1.30
98650--98688 19 2.1 19 95 0 69 28 7 0 64 1.21
98680--98719 2 20.0 2 90 10 64 47 0 2 50 1.14
99274--99361 45 2.0 44 93 2 149 61 3 1 34 1.20
99341--99391 20 2.5 21 90 6 79 78 0 0 21 0.75
99343--99392 17 3.0 17 91 2 75 80 0 0 20 0.72
99336--99392 6 9.7 6 75 11 55 77 0 0 22 0.77
102288--102318 13 2.5 12 94 5 53 16 0 0 83 0.64
105641--105669 13 2.2 13 100 0 58 37 0 10 51 1.36
110619--110649 15 2.0 16 93 6 55 38 0 22 38 1.54
115177--115211 10 3.5 10 100 0 70 60 8 0 31 1.27
120610--120665 18 3.1 18 100 0 112 21 39 5 33 1.76
125868--125897 15 2.0 15 100 0 60 26 0 13 60 1.34
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Tables: 1
The End!