NC_035548.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_035548.1 Hippophae rhamnoides chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  156132

    Tables:   1   

    This is table  1  of  1  ( 19 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  6361--6404                         23       1.9      23          86        9         63      77   2    4    15   1.04

  46382--46426                       22       2.1      21          84        12        56      64   4    4    26   1.32

  46441--46478                       14       2.7      14          84        12        51      65   2    2    28   1.19

  47173--47198                       13       2.0      13          100       0         52      46   0    7    46   1.31

  58179--58223                       21       2.1      21          92        8         74      46   4    17   31   1.68

  58193--58252                       30       2.0      30          93        6         104     48   3    16   31   1.63

  67804--67842                       21       1.9      21          89        5         62      33   25   7    33   1.84

  83247--83300                       27       2.0      27          85        0         72      27   24   12   35   1.92

  89103--89151                       21       2.3      21          85        0         71      12   20   6    61   1.52

  91525--91581                       18       3.2      18          94        0         105     35   5    24   35   1.78

  91525--91581                       9        6.3      9           72        0         51      35   5    24   35   1.78

  93698--93734                       18       2.1      18          100       0         74      21   21   16   40   1.91

  99298--99349                       14       4.1      14          69        23        51      34   9    13   42   1.77

  127720--127782                     33       1.9      33          83        0         81      34   4    7    52   1.52

  140769--140820                     14       4.1      14          69        23        51      42   13   9    34   1.77

  146384--146420                     18       2.1      18          100       0         74      40   16   21   21   1.91

  148537--148593                     18       3.2      18          94        0         105     35   24   5    35   1.78

  148537--148593                     9        6.3      9           72        0         51      35   24   5    35   1.78

  150964--151015                     21       2.5      21          83        0         77      59   7    21   11   1.56
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!