NC_035569.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035569.1 Broussonetia papyrifera plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160239
Tables: 1
This is table 1 of 1 ( 60 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4541--4573 16 2.1 16 88 5 50 60 9 6 24 1.49
8777--8802 13 2.0 13 100 0 52 38 7 0 53 1.30
15374--15414 13 3.2 13 89 0 64 26 17 0 56 1.41
19696--19729 18 1.9 17 94 5 59 23 2 2 70 1.15
34027--34084 26 2.3 25 85 11 82 55 3 8 32 1.47
34076--34117 20 2.2 19 87 12 59 50 0 0 50 1.00
34580--34650 14 5.6 14 75 24 86 26 8 4 60 1.44
34581--34652 24 3.0 24 100 0 144 25 8 4 62 1.41
38807--38871 18 3.6 17 71 18 51 47 1 0 50 1.10
38815--38872 24 2.3 26 77 17 68 48 0 0 51 1.00
38815--38891 12 6.3 12 73 18 61 49 0 1 49 1.09
38919--38974 28 2.0 29 86 10 80 53 1 3 41 1.29
39018--39080 26 2.4 27 91 2 101 61 1 3 33 1.21
39014--39090 26 2.7 27 82 13 93 62 1 2 33 1.17
45269--45310 14 3.0 15 80 16 54 59 0 0 40 0.97
45282--45323 18 2.6 16 82 17 52 54 0 2 42 1.13
45269--45338 27 2.6 27 81 6 79 61 0 1 37 1.05
45264--45330 32 2.1 32 83 5 82 61 0 1 37 1.05
48607--48637 15 2.1 15 93 0 53 41 16 12 29 1.85
49414--49439 11 2.4 11 100 0 52 57 0 7 34 1.27
49537--49579 22 2.0 22 95 0 77 44 6 2 46 1.43
49567--49598 13 2.4 13 94 5 55 50 0 0 50 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
49537--49598 22 2.9 21 81 13 65 46 4 1 46 1.33
50176--50230 29 1.9 28 85 3 74 23 9 0 67 1.19
50426--50468 14 2.8 15 86 13 61 51 6 4 37 1.50
51512--51538 13 2.1 13 100 0 54 59 14 0 25 1.36
53308--53345 12 3.2 12 100 0 76 42 0 15 42 1.47
54619--54654 18 2.0 18 100 0 72 44 11 5 38 1.63
55772--55806 17 2.1 17 100 0 70 17 5 22 54 1.64
62645--62706 25 2.4 25 86 13 81 77 1 3 17 0.98
62634--62690 21 2.6 22 81 10 64 75 1 3 19 1.04
62791--62822 16 2.0 16 93 0 55 43 12 3 40 1.58
62817--62849 11 3.1 11 95 4 59 33 0 9 57 1.30
62820--62854 11 3.5 10 92 7 54 37 0 8 54 1.31
62817--62864 19 2.4 21 80 13 57 37 2 6 54 1.38
62890--62925 18 2.0 18 88 0 54 33 8 8 50 1.63
62931--62965 18 1.9 18 94 0 61 42 5 5 45 1.51
62954--62983 15 2.0 15 100 0 60 46 6 6 40 1.56
69700--69738 21 2.0 19 85 14 53 53 7 0 38 1.30
71157--71212 26 2.2 26 100 0 112 35 26 10 26 1.89
72306--72344 21 1.9 21 89 5 62 30 23 10 35 1.88
73829--73859 15 2.1 15 100 0 62 41 12 6 38 1.69
81192--81218 13 2.1 13 100 0 54 33 14 0 51 1.43
93448--93515 21 3.2 21 82 0 82 11 22 7 58 1.57
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
95874--95912 18 2.2 18 100 0 78 33 5 25 35 1.78
103288--103328 14 3.1 14 79 13 59 39 4 12 43 1.63
103967--103995 13 2.2 13 100 0 58 48 0 20 31 1.50
108294--108337 15 2.9 15 96 0 79 38 27 6 27 1.82
118202--118227 11 2.4 11 100 0 52 34 0 0 65 0.93
118641--118670 15 2.0 15 100 0 60 53 0 0 46 1.00
118873--118919 19 2.4 20 89 3 69 51 6 2 40 1.39
119080--119114 17 2.1 17 88 0 52 48 14 11 25 1.77
119843--119872 13 2.4 13 94 5 53 60 0 0 40 0.97
123448--123480 14 2.4 14 100 0 66 45 9 6 39 1.61
130643--130672 15 2.0 15 100 0 60 46 0 13 40 1.43
140525--140568 15 2.9 15 96 0 79 27 6 27 38 1.82
144867--144895 13 2.2 13 100 0 58 31 20 0 48 1.50
145534--145574 14 3.1 14 79 13 59 43 12 4 39 1.63
152950--152988 18 2.2 18 100 0 78 35 25 5 33 1.78
155348--155436 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!