NC_035727.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035727.1 Citrullus colocynthis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157147
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4571--4601 11 2.8 11 95 0 53 64 0 0 35 0.94
9017--9056 19 2.0 20 90 4 64 15 22 0 62 1.32
9052--9116 16 3.9 16 78 7 76 47 1 6 44 1.37
10527--10575 2 26.0 2 76 12 50 51 0 0 48 1.00
10527--10575 17 3.0 16 94 5 73 51 0 0 48 1.00
11073--11099 13 2.1 13 100 0 54 55 7 14 22 1.64
29789--29824 17 2.1 17 89 0 54 44 2 13 38 1.59
30120--30166 18 2.7 18 83 3 60 42 21 8 27 1.81
32850--32879 10 3.0 10 100 0 60 30 0 30 40 1.57
34304--34362 25 2.4 25 85 5 75 44 10 8 37 1.69
61775--61808 12 3.0 12 91 8 54 61 8 0 29 1.26
72270--72303 17 2.0 17 100 0 68 41 5 5 47 1.52
91594--91649 24 2.5 24 85 8 73 14 17 14 53 1.73
91614--91682 21 3.3 21 81 2 77 11 21 8 57 1.60
94042--94098 18 3.2 18 94 0 105 31 5 28 35 1.79
94042--94098 9 6.3 9 72 0 51 31 5 28 35 1.79
110141--110206 32 2.1 32 97 0 123 40 24 9 25 1.84
116110--116145 18 2.0 18 100 0 72 33 0 0 66 0.92
133794--133859 32 2.1 32 97 0 123 25 9 24 40 1.84
149902--149958 18 3.2 18 94 0 105 35 28 5 31 1.79
149902--149958 9 6.3 9 72 0 51 35 28 5 31 1.79
152335--152386 21 2.5 21 87 0 77 59 11 19 9 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
152350--152406 24 2.5 22 86 8 71 54 14 17 14 1.71
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Tables: 1
The End!