NC_036133.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_036133.1 Prunus serotina chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158778
Tables: 1
This is table 1 of 1 ( 71 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
259--298 16 2.4 17 95 4 73 70 0 7 22 1.12
4509--4534 13 2.0 13 100 0 52 23 23 7 46 1.78
4840--4865 13 2.0 13 100 0 52 46 7 0 46 1.31
6536--6574 20 2.0 20 90 10 62 25 0 0 74 0.82
6559--6595 16 2.3 17 81 13 51 37 0 0 62 0.96
7164--7197 16 2.1 16 100 0 68 50 0 5 44 1.26
10235--10324 15 5.7 17 71 18 70 47 0 5 46 1.25
10248--10324 15 5.1 16 73 16 74 49 0 3 46 1.20
10420--10462 11 3.8 11 82 14 52 60 0 4 34 1.17
10443--10481 17 2.4 17 91 4 62 56 0 5 38 1.22
10449--10533 43 2.0 43 81 9 102 50 1 5 42 1.34
13034--13075 21 2.0 21 100 0 84 47 14 0 38 1.44
13648--13681 17 2.0 17 100 0 68 41 11 17 29 1.85
21436--21465 15 2.0 15 93 0 51 36 13 16 33 1.88
21441--21470 15 2.0 15 93 0 51 33 13 23 30 1.93
23262--23295 17 2.0 17 100 0 68 29 0 5 64 1.17
28685--28729 23 2.0 23 100 0 90 73 4 22 0 1.01
30888--30917 15 2.0 15 100 0 60 53 20 6 20 1.67
33494--33530 18 2.1 18 100 0 74 43 0 10 45 1.39
33541--33575 16 2.2 16 100 0 70 51 5 5 37 1.50
38519--38591 9 8.1 9 82 11 96 41 0 13 45 1.44
38513--38591 25 3.0 25 88 7 104 39 0 13 46 1.44
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
38520--38591 20 3.9 19 79 20 91 41 0 12 45 1.42
38623--38652 15 2.0 15 100 0 60 26 0 0 73 0.84
38611--38655 19 2.4 19 96 0 81 31 0 0 68 0.89
44553--44582 14 2.1 14 100 0 60 26 6 6 60 1.47
44748--44788 19 2.1 19 86 4 55 63 2 0 34 1.08
48564--48605 14 3.1 14 77 16 52 50 0 4 45 1.23
48983--49023 14 2.8 15 85 14 59 68 0 2 29 1.03
49539--49590 7 7.1 7 74 8 50 51 1 3 42 1.31
49530--49576 23 2.0 23 87 0 67 51 0 6 42 1.27
49627--49653 9 3.0 9 100 0 54 44 0 22 33 1.53
52195--52226 16 2.0 16 100 0 64 18 12 12 56 1.67
53661--53694 15 2.1 17 89 10 54 38 5 5 50 1.51
53731--53791 24 2.6 24 92 2 97 44 3 1 50 1.28
53747--53818 33 2.3 30 83 7 81 47 4 2 45 1.36
53832--53890 21 3.0 20 85 12 61 16 1 3 77 0.98
53853--53898 21 2.2 21 100 0 92 17 0 8 73 1.07
54924--54975 17 3.1 17 100 0 104 42 0 5 51 1.25
57655--57680 13 2.0 13 100 0 52 38 0 15 46 1.46
59227--59289 31 2.0 31 100 0 126 33 9 12 44 1.75
66192--66223 16 2.0 16 93 0 55 40 0 9 50 1.35
66366--66392 13 2.1 13 100 0 54 37 7 29 25 1.83
68335--68369 17 2.1 17 94 0 61 37 5 8 48 1.58
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
70275--70315 17 2.3 18 91 4 66 34 7 0 58 1.26
72757--72793 15 2.5 15 95 0 65 56 0 5 37 1.22
75014--75040 13 2.1 13 100 0 54 29 7 0 62 1.22
77407--77442 18 2.0 18 88 0 54 41 8 8 41 1.65
88018--88057 20 2.0 20 95 0 71 37 10 2 50 1.50
92181--92270 21 4.1 21 80 5 81 12 23 8 55 1.64
94631--94682 18 2.9 18 94 0 95 32 7 28 30 1.85
97645--97684 15 2.6 16 88 7 57 50 5 0 45 1.23
97651--97684 16 2.2 15 89 5 50 50 5 0 44 1.26
97644--97692 17 2.9 17 74 20 57 53 6 0 40 1.26
102190--102216 12 2.2 12 100 0 54 7 7 0 85 0.75
102187--102220 17 2.0 17 88 11 52 8 8 0 82 0.85
110906--110969 31 2.1 31 96 0 119 39 25 9 26 1.86
116969--116999 16 1.9 16 93 0 53 48 0 9 41 1.36
117029--117069 16 2.6 16 92 0 64 48 0 0 51 1.00
117027--117081 14 3.9 14 79 9 58 54 0 0 45 0.99
117567--117603 18 2.1 17 95 5 65 56 5 2 35 1.36
117891--117915 12 2.1 12 100 0 50 68 0 8 24 1.16
131142--131175 15 2.3 15 94 0 59 0 20 5 73 1.04
135091--135154 31 2.1 31 96 0 119 26 9 25 39 1.86
143844--143870 12 2.2 12 100 0 54 85 0 7 7 0.75
143840--143873 17 2.0 17 88 11 52 82 0 8 8 0.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
148370--148416 16 2.8 17 75 21 53 42 0 6 51 1.27
148376--148415 15 2.6 16 88 7 57 45 0 5 50 1.23
151378--151429 18 2.9 18 94 0 95 30 28 7 32 1.85
153790--153879 21 4.1 21 80 5 81 55 8 23 12 1.64
158003--158042 20 2.0 20 95 0 71 50 2 10 37 1.50
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Tables: 1
The End!