NC_036223.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_036223.1 Adenophora stricta chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159759
Tables: 1
This is table 1 of 1 ( 71 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5612--5643 16 2.0 16 93 0 55 40 18 3 37 1.67
6709--7096 114 3.4 114 92 1 571 27 24 22 26 2.00
8029--8063 18 1.9 18 94 0 61 42 11 5 40 1.65
8725--8749 13 1.9 13 100 0 50 44 0 8 48 1.32
27618--27819 70 2.9 70 94 1 352 26 19 15 38 1.92
28186--28220 17 2.1 17 100 0 70 17 28 0 54 1.43
30182--30246 33 2.0 33 100 0 130 30 18 15 35 1.92
30412--30658 61 4.0 61 97 1 451 31 7 16 45 1.74
31026--31177 61 2.5 61 92 3 245 31 7 17 44 1.76
31118--31437 80 4.0 80 97 0 606 32 7 21 38 1.81
34156--34221 24 3.0 22 81 12 82 28 9 28 33 1.88
36469--36508 20 2.0 20 90 0 62 50 2 17 30 1.59
38357--38961 80 7.8 80 90 5 845 32 7 20 39 1.80
44798--44829 17 1.9 16 93 6 55 43 6 25 25 1.77
45464--45493 15 2.0 15 100 0 60 33 13 13 40 1.83
47164--47601 74 5.8 74 92 2 689 38 20 7 33 1.80
47098--47601 222 2.2 224 88 5 726 38 20 7 34 1.80
54560--54590 16 1.9 16 100 0 62 58 6 9 25 1.54
55158--55235 39 2.0 39 87 5 113 37 23 14 25 1.92
62294--62338 20 2.2 20 96 0 81 17 31 4 46 1.68
63345--63898 181 3.1 181 98 0 1045 27 9 17 44 1.80
65456--65485 15 2.0 15 100 0 60 40 13 13 33 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
68112--68184 20 3.7 20 100 0 146 43 5 35 15 1.69
70488--70512 12 2.1 12 100 0 50 36 24 0 40 1.55
81213--81333 61 2.0 60 93 1 206 28 9 15 46 1.77
81274--81588 80 4.0 80 94 4 543 32 7 20 39 1.81
81274--81588 154 2.0 155 93 3 533 32 7 20 39 1.81
94044--94179 45 3.0 45 94 0 227 39 9 25 25 1.86
104770--104850 21 3.6 21 72 15 81 35 6 8 49 1.59
105392--105431 15 2.7 15 100 0 80 47 20 32 0 1.50
106045--106108 33 1.9 33 100 0 128 39 3 28 29 1.72
106974--107090 39 3.0 39 81 2 110 27 25 22 24 2.00
106986--107092 39 2.7 39 82 2 117 27 25 23 24 2.00
107269--107539 51 5.3 51 81 3 197 33 14 18 32 1.92
107265--107846 153 3.9 148 73 13 415 32 15 18 32 1.93
107308--107539 102 2.3 102 76 5 227 34 14 17 34 1.90
107506--107575 36 1.9 36 97 0 131 32 15 11 40 1.83
107454--107626 87 2.0 87 97 0 328 32 16 15 35 1.90
107542--107822 51 5.5 51 87 3 395 31 17 18 33 1.94
107686--107846 51 3.2 51 78 7 218 30 16 21 32 1.95
107542--107874 102 3.3 102 90 1 472 30 18 18 33 1.94
107546--107896 153 2.3 153 79 2 411 30 18 18 32 1.95
108440--108473 12 2.8 12 100 0 68 44 0 41 14 1.45
108494--108545 24 2.2 24 100 0 104 36 7 32 23 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
108596--108627 12 2.7 12 100 0 64 59 15 0 25 1.36
108608--108681 33 2.2 33 97 0 139 54 12 13 20 1.71
108653--108713 21 2.9 21 80 9 79 44 9 24 21 1.82
109817--109842 12 2.2 12 100 0 52 34 0 19 46 1.50
118654--119055 26 14.8 26 79 12 445 26 24 32 16 1.96
118654--119055 55 7.4 52 82 11 445 26 24 32 16 1.96
122318--122382 3 21.7 3 74 0 58 58 1 30 9 1.39
122318--122383 18 3.7 18 93 0 114 57 1 30 10 1.42
125055--125660 74 7.9 79 84 7 654 32 7 19 40 1.79
125827--126063 81 3.0 80 88 3 343 26 13 13 45 1.81
126277--126316 20 2.0 20 95 0 71 45 10 7 37 1.66
138345--138457 57 2.0 57 91 0 181 21 15 11 52 1.73
139327--139397 26 2.7 27 95 4 135 15 33 25 25 1.95
140268--140445 57 3.1 57 100 0 356 15 20 8 55 1.66
141136--141208 18 4.1 18 100 0 146 10 10 5 72 1.26
141120--141200 36 2.2 36 84 2 99 14 8 6 70 1.32
141841--141894 18 3.0 18 100 0 108 16 22 5 55 1.62
142735--142920 9 20.0 9 73 18 132 2 31 1 65 1.11
142721--142916 66 3.0 66 91 4 294 3 30 1 64 1.17
142838--142921 27 3.1 27 96 1 150 0 30 0 69 0.89
143287--143867 33 17.6 33 93 0 928 17 25 13 44 1.84
145691--145715 12 2.1 12 100 0 50 24 40 16 20 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
147237--147269 16 2.1 16 88 5 50 21 39 12 27 1.88
149699--149763 3 21.7 3 74 0 58 9 30 1 58 1.39
149698--149763 18 3.7 18 93 0 114 10 30 1 57 1.42
153026--153427 55 7.4 52 83 10 445 16 32 24 26 1.96
153026--153427 29 14.8 26 80 12 445 16 32 24 26 1.96
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Tables: 1
The End!