NC_036342.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_036342.1 Pleione bulbocodioides chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159269
Tables: 1
This is table 1 of 1 ( 43 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3603--3640 19 2.1 19 85 5 51 60 2 13 23 1.45
3715--3749 17 2.1 17 88 0 52 11 8 8 71 1.31
5138--5174 18 2.1 18 100 0 74 16 21 0 62 1.33
6617--6650 16 2.2 15 89 5 50 44 5 2 47 1.42
6637--6689 22 2.4 22 96 0 97 49 1 9 39 1.46
8853--8904 20 2.7 20 85 11 72 40 5 5 48 1.51
8953--8995 22 2.0 22 81 9 52 30 11 11 46 1.76
9026--9064 14 2.8 14 92 0 60 35 5 15 43 1.69
15934--15958 12 2.1 12 100 0 50 48 0 16 36 1.46
28095--28127 17 1.9 17 93 0 57 15 15 27 42 1.86
28611--28672 15 4.1 15 73 17 56 59 1 8 30 1.36
29437--29502 25 2.5 26 80 4 80 12 9 1 77 1.06
32649--32688 16 2.5 15 84 11 53 65 2 10 22 1.35
32953--32981 14 2.1 14 100 0 58 58 6 6 27 1.50
51991--52026 12 3.0 12 100 0 72 33 0 33 33 1.58
56632--56679 23 2.2 22 85 7 62 14 4 6 75 1.16
56632--56698 22 3.0 22 81 10 66 16 5 4 73 1.20
61119--61145 13 2.1 13 100 0 54 44 0 0 55 0.99
67838--67866 14 2.1 14 100 0 58 44 0 20 34 1.52
67841--67874 14 2.4 14 90 0 50 50 0 20 29 1.49
69426--69455 15 2.0 15 100 0 60 13 13 6 66 1.43
70022--70051 15 2.0 15 93 0 51 63 13 16 6 1.50
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
70058--70101 21 2.1 21 86 0 61 34 25 9 31 1.87
71349--71384 18 2.0 18 88 0 54 30 8 2 58 1.42
74305--74339 16 2.2 16 90 5 54 45 2 11 40 1.55
74348--74375 14 2.0 14 100 0 56 42 21 0 35 1.53
82717--82744 14 2.0 14 100 0 56 50 7 14 28 1.69
92566--92676 21 5.1 21 94 3 168 13 27 9 48 1.74
95038--95104 24 3.6 18 74 25 59 32 5 23 37 1.79
95045--95097 24 2.2 24 100 0 106 33 7 24 33 1.84
103143--103184 14 2.9 14 89 3 57 21 11 2 64 1.38
103147--103190 14 3.1 14 84 12 54 25 9 2 63 1.35
116384--116434 21 2.5 20 81 9 57 33 5 1 58 1.33
116486--116527 21 2.1 20 82 8 50 26 11 0 61 1.30
117389--117425 10 3.8 10 89 7 58 21 8 0 70 1.13
117893--117932 20 2.0 20 100 0 80 15 20 45 20 1.86
119301--119337 19 1.9 19 88 0 56 56 5 8 29 1.51
121700--121738 14 2.8 14 88 0 51 51 7 0 41 1.31
127364--127414 19 2.7 20 78 6 61 76 3 5 13 1.11
143211--143252 14 2.9 14 89 3 57 64 2 11 21 1.38
151298--151350 24 2.2 24 100 0 106 33 24 7 33 1.84
151291--151354 18 3.2 19 73 26 53 35 25 6 32 1.81
153719--153829 21 5.1 21 94 3 168 48 9 27 13 1.74
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Tables: 1
The End!