NC_036485.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_036485.1 Coptis chinensis chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  155484

    Tables:   1   

    This is table  1  of  1  ( 13 repeats found )

    Click on indices to view alignment

Table Explanation

  ----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ----- ---------
  Indices                             Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T     Entropy
                                      Size     Number   Size        Matches   Indels                                 (0-2)

  6608--6644                          18       2.1      18          100       0         74      29   10   21   37    1.88

  12754--12781                        14       2.0      14          100       0         56      21   7    0    71    1.09

  26839--26885                        21       2.2      21          92        0         76      34   8    23   34    1.85

  32263--32305                        17       2.6      17          79        17        54      44   0    6    48    1.29

  58238--58271                        17       2.0      17          94        0         59      55   0    5    38    1.24

  66676--66712                        17       2.1      18          90        5         58      32   10   5    51    1.60

  79776--79822                        24       2.0      24          91        0         76      21   34   19   25    1.96

  91827--91887                        18       3.6      18          91        6         92      32   6    24   36    1.81

  119786--119820                      18       1.9      18          88        0         52      45   0    0    54    0.99

  125399--125430                      1        32.0     1           100       0         64      0    0    0    100   0.00

  125407--125464                      30       1.9      30          89        0         89      12   1    3    82    0.86

  125326--125522                      108      1.8      108         85        4         281     21   10   7    60    1.52

  148149--148209                      18       3.6      18          91        6         92      36   24   6    32    1.81
  ----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ----- ---------

    Tables:   1   

The End!