NC_036807.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_036807.1 Momordica charantia isolate OHB3-1 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158844
Tables: 1
This is table 1 of 1 ( 39 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4569--4611 21 2.0 21 100 0 86 62 0 9 27 1.25
4572--4628 21 2.6 21 86 8 69 66 0 8 24 1.20
4646--4697 18 3.1 18 86 10 74 55 0 0 44 0.99
4670--4700 15 2.1 15 100 0 62 61 0 0 38 0.96
6778--6818 10 3.8 10 82 17 55 31 2 0 65 1.05
6777--6823 23 2.0 23 100 0 94 36 4 0 59 1.17
7131--7156 13 2.0 13 100 0 52 69 7 0 23 1.14
9361--9423 16 3.8 16 76 15 56 44 6 4 44 1.50
9368--9423 18 3.2 18 80 14 64 44 7 3 44 1.48
30494--30529 17 2.1 17 89 0 54 44 2 13 38 1.59
30939--30982 9 4.6 9 81 15 52 25 0 4 70 1.06
31318--31361 16 2.8 16 100 0 88 38 13 4 43 1.65
33642--33685 19 2.3 19 88 11 72 70 2 0 27 0.99
33693--33722 15 2.0 15 100 0 60 40 0 0 60 0.97
35079--35108 15 2.0 15 93 0 51 56 6 23 13 1.60
39277--39333 15 3.8 15 75 6 53 61 0 1 36 1.07
39780--39813 17 2.0 17 100 0 68 35 5 11 47 1.65
50065--50092 13 2.2 13 100 0 56 39 0 0 60 0.97
50053--50092 11 3.5 11 83 12 53 35 2 0 62 1.09
50956--50993 8 4.4 9 83 12 53 31 0 0 68 0.90
54307--54348 20 2.1 20 100 0 84 59 0 0 40 0.97
54311--54353 11 4.0 11 85 14 63 55 0 0 44 0.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
54317--54378 20 3.2 20 82 8 67 48 0 1 50 1.10
54347--54381 17 2.1 17 100 0 70 42 0 5 51 1.25
60935--61075 36 3.9 36 92 1 205 53 9 4 32 1.52
61323--61370 24 2.0 24 100 0 96 37 8 16 37 1.79
63086--63119 12 3.0 12 91 8 54 61 8 0 29 1.26
69226--69278 21 2.6 20 80 11 54 47 0 5 47 1.26
93047--93129 21 3.7 23 75 18 77 13 22 9 54 1.68
93069--93136 21 3.2 21 82 0 82 11 22 7 58 1.57
95495--95551 18 3.2 18 94 0 105 31 5 28 35 1.79
95495--95551 9 6.3 9 72 0 51 31 5 28 35 1.79
111724--111789 32 2.1 32 97 0 123 40 24 9 25 1.84
123136--123168 15 2.2 16 89 10 52 36 12 9 42 1.74
131369--131531 36 4.5 36 99 0 317 7 27 5 58 1.48
135430--135495 32 2.1 32 97 0 123 25 9 24 40 1.84
151668--151724 18 3.2 18 94 0 105 35 28 5 31 1.79
151668--151724 9 6.3 9 72 0 51 35 28 5 31 1.79
154084--154172 21 4.1 21 81 5 81 56 8 22 12 1.64
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Tables: 1
The End!