NC_036992.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_036992.1 Amomum compactum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 163553
Tables: 1
This is table 1 of 1 ( 71 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1322--1355 13 2.6 13 100 0 68 32 14 0 52 1.42
4348--4389 21 1.9 21 85 9 57 50 19 9 21 1.75
6522--6563 12 3.4 12 83 6 57 61 0 0 38 0.96
6522--6567 13 3.7 13 85 8 69 63 0 0 36 0.95
6620--6657 20 1.9 20 100 0 76 34 5 21 39 1.76
7264--7289 13 2.0 13 100 0 52 15 0 30 53 1.42
8148--8187 20 2.0 20 95 0 71 50 0 7 42 1.30
8420--8444 13 1.9 13 100 0 50 72 12 0 16 1.13
9012--9053 14 2.9 15 89 7 68 54 0 4 40 1.21
9071--9097 13 2.1 13 100 0 54 37 0 7 55 1.28
14984--15040 10 5.2 11 76 21 57 59 0 0 40 0.97
14984--15039 17 3.4 16 78 11 60 58 0 0 41 0.98
14984--15112 10 11.8 12 68 22 54 61 0 3 34 1.15
15268--15313 15 3.1 16 73 20 55 63 4 0 32 1.14
28576--28603 14 2.0 14 100 0 56 35 7 0 57 1.26
31474--31505 16 2.0 16 100 0 64 31 18 6 43 1.75
32041--32072 16 2.0 16 100 0 64 43 12 12 31 1.80
32886--32916 15 2.1 15 100 0 62 19 6 12 61 1.53
32986--33050 29 2.2 29 86 0 94 44 15 20 20 1.86
33585--33630 23 2.0 23 100 0 92 43 8 13 34 1.74
33728--33800 3 25.3 3 72 22 59 32 0 1 65 1.01
33711--33790 26 3.1 26 81 13 78 28 1 1 68 1.05
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
33741--33782 19 2.3 19 95 4 77 33 0 0 66 0.92
33728--33795 16 4.2 16 74 12 68 32 0 1 66 1.01
33751--33797 13 3.7 13 83 13 62 34 0 0 65 0.93
34828--34869 21 2.0 21 90 0 66 38 14 9 38 1.78
35145--35196 20 2.6 20 82 11 54 59 1 3 34 1.27
35539--35578 15 2.7 15 96 3 73 32 0 7 60 1.25
49236--49266 15 2.1 15 93 0 53 16 6 9 67 1.39
49480--49510 13 2.5 13 94 5 55 48 29 0 22 1.51
54242--54271 16 1.9 15 93 6 51 56 0 3 40 1.16
54392--54439 13 3.4 14 82 8 62 54 2 0 43 1.12
61037--61084 25 2.0 25 91 4 80 60 6 8 25 1.49
61275--61323 24 2.0 24 92 7 82 36 0 0 63 0.95
63454--63484 15 2.1 15 93 0 53 32 3 0 64 1.09
63556--63601 23 2.1 23 84 11 62 45 6 2 45 1.41
65881--65913 17 1.9 17 100 0 66 42 9 6 42 1.61
69229--69351 5 23.0 5 72 19 56 52 1 6 39 1.37
69228--69284 29 1.9 30 89 3 89 52 1 5 40 1.34
69232--69350 32 3.8 32 76 14 106 51 1 6 40 1.38
69235--69353 62 1.9 61 83 8 152 50 2 6 40 1.42
69276--69351 20 3.8 20 72 10 66 51 1 7 39 1.39
71633--71689 27 2.1 27 100 0 114 33 14 3 49 1.60
71668--71727 20 3.3 18 80 17 63 46 5 0 48 1.24
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
71639--71719 27 3.0 27 85 8 87 41 9 1 46 1.45
71668--71727 16 3.4 17 81 13 59 46 5 0 48 1.24
71701--71744 21 2.1 21 87 8 63 54 0 0 45 0.99
72282--72346 21 3.1 21 90 0 103 33 24 9 32 1.87
79801--79841 21 2.0 21 95 0 73 65 0 9 24 1.22
80825--80862 19 2.0 19 100 0 76 42 10 10 36 1.74
86767--86807 5 8.2 5 80 20 50 24 0 0 75 0.80
86773--86811 8 4.8 8 82 17 53 25 0 0 74 0.82
86768--86811 11 3.5 13 84 15 65 25 0 0 75 0.81
91250--91345 50 1.9 50 97 0 183 42 17 9 30 1.81
93898--93959 21 2.8 22 90 7 90 14 25 11 48 1.77
93919--93966 21 2.3 21 92 0 78 12 31 8 47 1.71
95203--95245 21 2.0 21 90 0 68 32 9 25 32 1.88
96403--96450 24 2.0 24 87 0 69 31 10 25 33 1.89
99495--99538 22 2.0 22 100 0 88 59 13 9 18 1.60
116180--116221 21 2.0 21 90 0 66 52 7 26 14 1.67
121739--121781 21 2.1 20 91 4 68 58 0 9 32 1.30
121744--121786 21 2.0 21 95 0 77 60 0 9 30 1.28
126027--126148 2 62.5 2 69 22 55 42 4 4 48 1.43
131776--131814 20 2.0 20 85 10 53 35 0 2 61 1.10
135868--135909 21 2.0 21 90 0 66 14 26 7 52 1.67
152551--152594 22 2.0 22 100 0 88 18 9 13 59 1.60
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
155639--155686 24 2.0 24 87 0 69 33 25 10 31 1.89
156844--156886 21 2.0 21 90 0 68 32 25 9 32 1.88
158123--158191 21 3.1 22 85 8 86 49 10 27 13 1.73
158130--158191 21 2.7 23 90 7 92 48 11 25 14 1.77
160744--160839 50 1.9 50 97 0 183 30 9 17 42 1.81
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Tables: 1
The End!