NC_037145.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037145.1 Schisandra sphenanthera voucher Bai20150904 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 146843
Tables: 1
This is table 1 of 1 ( 28 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
9815--9844 10 2.8 11 90 10 53 16 6 6 70 1.31
24930--24958 14 2.0 15 93 6 51 27 13 17 41 1.87
29626--29654 15 1.9 15 100 0 58 34 6 24 34 1.82
32736--32766 11 2.8 11 95 0 53 29 22 12 35 1.91
47096--47121 13 2.0 13 100 0 52 23 7 15 53 1.67
48315--48345 12 2.6 12 94 0 53 29 16 0 54 1.42
48341--48378 18 2.0 20 90 10 62 13 7 5 73 1.22
52615--52664 21 2.4 20 80 6 55 46 2 8 44 1.44
52629--52689 20 3.2 20 84 11 67 49 0 6 44 1.28
52637--52665 13 2.2 13 100 0 58 48 0 6 44 1.29
59479--59537 19 3.1 19 92 0 100 27 23 11 37 1.90
60702--60727 12 2.2 12 100 0 52 50 7 0 42 1.31
61558--61591 15 2.3 15 94 0 59 44 8 5 41 1.60
68690--68723 17 2.0 17 100 0 68 52 17 23 5 1.66
69811--69841 15 2.0 16 93 6 55 25 9 0 64 1.24
70314--70355 21 2.0 21 90 0 66 33 21 11 33 1.90
81477--81525 24 2.0 24 92 0 80 30 30 10 28 1.90
93440--93588 24 6.2 24 93 0 244 32 4 31 30 1.78
94860--94919 15 4.0 15 100 0 120 46 0 26 26 1.53
95905--95934 14 2.1 14 93 0 51 40 20 10 30 1.85
100430--100456 13 2.1 13 100 0 54 22 7 0 70 1.12
110648--110713 18 3.4 18 69 25 53 36 13 21 28 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
111398--111432 18 1.9 18 94 0 61 45 8 14 31 1.75
125751--125781 14 2.2 14 100 0 62 16 0 12 70 1.16
131040--131074 18 1.9 18 94 0 61 31 14 8 45 1.75
131759--131824 18 3.4 18 69 25 53 28 21 13 36 1.91
142016--142042 13 2.1 13 100 0 54 70 0 7 22 1.12
146538--146567 14 2.1 14 93 0 51 30 10 20 40 1.85
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Tables: 1
The End!