NC_037216.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037216.1 Fritillaria pallidiflora isolate CBX29-1 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152078
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7352--7398 23 2.0 23 95 0 85 21 23 10 44 1.83
7511--7544 17 2.0 17 94 0 59 50 5 0 44 1.26
11162--11191 15 1.9 16 93 6 53 16 0 6 76 0.99
27780--27839 26 2.3 26 80 11 77 48 1 3 46 1.28
27798--27834 13 2.8 14 80 16 51 48 0 2 48 1.15
30194--30240 13 3.6 13 94 0 67 53 8 2 36 1.44
30186--30225 22 1.9 20 90 10 62 52 12 0 35 1.39
30372--30396 11 2.3 11 100 0 50 44 0 0 56 0.99
44090--44135 23 2.0 23 83 8 58 56 6 0 36 1.25
44265--44305 19 2.2 19 100 0 82 58 0 0 41 0.98
45913--45938 13 2.0 13 100 0 52 46 15 0 38 1.46
54051--54080 14 2.1 14 93 0 51 53 3 6 36 1.44
54194--54226 15 2.1 16 88 5 50 21 0 6 72 1.05
56441--56501 24 2.4 24 75 8 59 42 6 1 49 1.38
75382--75427 17 2.8 17 93 3 76 45 4 0 50 1.21
76879--76927 24 2.0 24 88 0 71 26 32 14 26 1.94
78100--78161 32 1.9 31 84 12 81 43 0 0 56 0.99
79328--79364 18 2.1 18 90 10 58 21 0 10 67 1.21
86617--86664 21 2.3 21 96 0 87 12 33 8 45 1.72
88957--89061 24 4.4 24 96 0 192 31 8 23 36 1.85
110581--110631 22 2.3 23 79 3 59 33 3 3 58 1.35
122908--122937 15 2.0 15 93 0 51 43 10 0 46 1.37
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
144791--144895 24 4.4 24 96 0 192 36 23 8 31 1.85
147188--147235 21 2.2 22 92 7 89 45 8 33 12 1.72
147195--147249 21 2.5 21 88 8 74 43 10 29 16 1.82
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Tables: 1
The End!