NC_037439.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037439.1 Cremastra appendiculata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155320
Tables: 1
This is table 1 of 1 ( 92 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
391--434 13 3.5 13 90 3 72 65 0 18 15 1.27
391--434 6 7.0 6 85 10 61 65 0 18 15 1.27
393--431 19 2.0 20 90 5 62 66 0 17 15 1.25
3825--4006 90 2.0 89 98 1 355 43 6 8 41 1.62
6139--6265 61 2.2 60 92 7 217 35 20 10 33 1.86
6663--6696 17 2.0 17 100 0 68 41 17 0 41 1.50
6965--7018 9 6.4 9 78 18 55 44 25 0 29 1.54
6958--7019 21 3.0 19 80 15 61 46 24 0 29 1.53
6965--7019 4 13.2 4 76 19 51 45 25 0 29 1.54
6964--7019 15 3.7 14 78 19 51 44 25 0 30 1.54
7061--7175 50 2.3 49 92 5 187 54 5 6 33 1.49
7481--7510 15 2.0 15 100 0 60 60 0 13 26 1.34
7838--8053 107 2.0 107 100 0 432 39 13 7 38 1.73
8605--8717 53 2.2 51 92 7 185 44 8 7 39 1.63
8922--9075 67 2.4 67 92 4 253 36 12 10 40 1.77
9496--9592 38 2.5 39 90 6 146 46 4 4 45 1.41
9520--9551 12 2.4 14 90 10 50 53 0 0 46 1.00
9858--9957 43 2.4 41 90 6 150 61 4 15 20 1.50
9878--9946 21 3.2 22 69 19 65 57 4 14 23 1.55
13790--13819 15 2.0 15 100 0 60 40 13 0 46 1.43
13876--13971 47 2.1 45 94 5 165 33 12 15 38 1.85
23668--23780 54 2.2 52 93 6 194 22 27 10 39 1.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
29385--29678 146 2.0 146 100 0 588 29 11 19 40 1.86
30259--30307 16 2.9 16 78 6 53 32 0 16 51 1.45
30109--30514 203 2.0 203 100 0 812 34 6 14 43 1.72
30462--30510 16 2.9 16 78 6 53 32 0 16 51 1.45
33435--33576 70 2.1 68 97 2 266 29 30 7 33 1.84
34078--34245 78 2.2 78 94 4 299 37 11 13 36 1.82
37460--37647 95 2.0 93 97 2 358 32 14 11 40 1.82
37831--37958 62 2.1 60 95 2 229 35 14 15 33 1.89
43517--43610 39 2.4 39 92 1 154 53 4 7 35 1.49
44684--44878 97 2.0 97 100 0 390 29 17 18 34 1.94
46733--46870 69 2.0 68 97 1 258 34 13 20 31 1.91
48047--48072 13 2.0 13 100 0 52 46 0 15 38 1.46
48079--48337 127 2.0 127 99 0 511 55 6 7 30 1.55
49141--49180 11 3.5 11 80 6 53 15 10 0 75 1.05
49135--49185 23 2.2 24 96 3 95 17 9 0 72 1.11
50245--50443 100 2.0 98 98 1 380 22 20 7 50 1.72
50519--50820 152 2.0 152 100 0 604 32 17 16 33 1.93
55437--55553 52 2.2 53 93 4 202 31 9 1 57 1.41
57764--57793 15 2.0 15 100 0 60 53 13 6 26 1.64
60165--60223 23 2.6 23 74 15 59 69 3 5 22 1.23
60624--60650 13 2.1 13 100 0 54 44 0 0 55 0.99
64569--64789 109 2.0 108 98 1 426 38 16 16 28 1.90
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
66540--66567 14 2.0 14 100 0 56 42 14 0 42 1.45
66908--66951 22 2.0 21 82 4 52 22 4 4 68 1.27
67079--67237 51 3.2 51 65 15 150 42 9 14 33 1.78
67039--67238 99 2.0 99 99 0 391 45 10 14 30 1.78
69682--69711 15 2.0 15 93 0 51 63 13 16 6 1.50
69718--69761 21 2.1 21 86 0 61 34 25 9 31 1.87
70778--70885 54 2.0 53 98 1 207 17 28 14 38 1.90
71211--71390 85 2.2 85 94 4 323 39 17 13 28 1.89
74155--74210 25 2.2 25 81 12 62 32 5 1 60 1.29
74208--74232 12 2.1 12 100 0 50 68 0 0 32 0.90
74203--74245 10 4.2 10 80 16 52 62 0 2 34 1.08
74527--74566 21 1.9 21 90 10 64 20 25 0 55 1.44
79705--79776 35 2.1 36 94 5 130 36 8 18 37 1.81
81986--82032 24 2.0 24 82 0 58 27 23 12 36 1.91
84617--84651 18 1.9 18 94 0 61 51 0 5 42 1.25
85064--85122 27 2.2 27 84 6 75 20 11 0 67 1.21
89311--89357 22 2.1 22 100 0 94 27 23 10 38 1.88
89517--89567 25 2.0 25 100 0 102 23 15 13 47 1.82
95125--95172 18 2.8 18 87 9 66 33 4 22 39 1.74
96953--97003 25 2.0 25 100 0 102 33 27 15 23 1.95
102928--102972 22 2.0 22 83 8 56 6 13 4 75 1.15
102941--102984 17 2.5 19 82 14 58 2 13 4 79 0.98
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
102941--102999 17 3.3 17 79 15 57 5 15 5 74 1.17
103493--103689 98 2.0 98 100 0 394 23 15 17 44 1.86
112522--112551 8 3.9 8 91 8 53 53 0 20 26 1.46
112522--112552 15 2.1 15 100 0 62 54 0 19 25 1.44
115772--115802 14 2.2 14 100 0 62 22 12 0 64 1.27
115779--115819 14 2.9 15 82 13 52 21 17 0 60 1.35
115738--115922 93 2.0 91 96 2 343 21 12 1 64 1.36
115865--115895 14 2.2 14 100 0 62 22 12 0 64 1.27
115872--115912 14 2.9 15 82 13 52 21 17 0 60 1.35
116242--116398 65 2.5 64 90 5 241 34 17 7 41 1.76
117872--117908 19 1.9 19 88 0 56 56 5 8 29 1.51
122549--122749 99 2.0 99 100 0 402 57 6 10 24 1.57
123176--123204 14 2.1 14 100 0 58 65 13 0 20 1.26
123328--123447 58 2.1 55 93 6 206 30 18 9 41 1.81
124252--124416 50 3.3 49 64 22 128 18 14 6 60 1.55
124264--124464 98 2.1 97 98 1 386 18 12 8 59 1.59
125503--125727 112 2.0 112 100 0 450 25 9 9 54 1.64
129868--129897 8 3.9 8 91 8 53 26 20 0 53 1.46
129867--129897 15 2.1 15 100 0 62 25 19 0 54 1.44
138730--138926 98 2.0 98 100 0 394 44 17 15 23 1.86
139420--139478 18 3.3 17 79 15 57 74 5 15 5 1.17
145416--145466 25 2.0 25 100 0 102 23 15 27 33 1.95
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
147247--147282 18 2.0 18 94 0 63 36 25 5 33 1.79
152852--152902 25 2.0 25 100 0 102 47 13 15 23 1.82
153030--153072 20 2.3 18 78 17 52 25 6 30 37 1.82
153062--153108 22 2.1 22 100 0 94 38 10 23 27 1.88
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Tables: 1
The End!