NC_037893.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037893.1 Cibotium barometz chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 166027
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
22691--22716 13 2.0 13 100 0 52 61 0 23 15 1.33
27778--27826 16 2.9 17 93 6 91 69 18 12 0 1.19
30345--30372 8 3.5 8 100 0 56 28 10 25 35 1.89
52285--52315 11 2.8 11 95 0 53 38 9 19 32 1.84
62886--62916 10 3.1 10 100 0 62 48 0 19 32 1.49
87949--88069 61 2.0 61 100 0 242 38 8 30 23 1.84
88226--88303 20 3.8 20 94 1 129 34 21 20 23 1.97
99301--99358 18 3.2 18 83 9 55 24 12 29 34 1.91
99312--99692 9 42.3 9 79 9 303 24 13 29 31 1.94
99301--99692 81 4.8 81 80 6 341 25 13 29 31 1.94
101099--101522 9 47.1 9 76 10 206 37 24 12 25 1.91
101108--101324 45 4.8 45 81 0 272 37 24 11 25 1.90
101108--101324 90 2.4 90 94 0 371 37 24 11 25 1.90
101198--101450 117 2.2 117 91 1 400 37 24 13 24 1.91
101899--101928 8 3.8 8 90 0 51 20 0 70 10 1.16
149765--149794 8 3.8 8 90 0 51 10 70 0 20 1.16
150171--150594 9 47.1 9 76 10 206 25 12 24 37 1.91
150243--150495 117 2.2 117 91 1 400 24 13 24 37 1.91
150337--150598 90 2.8 91 75 11 253 25 11 25 37 1.90
152001--152381 9 42.3 9 79 9 303 31 29 13 24 1.94
152001--152190 81 2.3 81 96 0 344 31 28 13 26 1.94
163390--163467 20 3.8 20 94 1 129 23 20 21 34 1.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
163624--163744 61 2.0 61 100 0 242 23 30 8 38 1.84
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Tables: 1
The End!