NC_039654.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_039654.1 Prunella vulgaris chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151342
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
26840--26871 16 2.0 16 100 0 64 31 12 0 56 1.37
26875--26901 14 1.9 14 100 0 54 44 11 0 44 1.39
28670--28719 19 2.8 19 91 8 79 36 0 16 48 1.46
28744--28770 13 2.1 13 100 0 54 55 7 7 29 1.55
28800--28836 17 2.2 17 100 0 74 45 5 21 27 1.73
31650--31679 15 2.0 15 93 0 51 56 10 13 20 1.65
41383--41439 22 2.6 22 81 13 57 43 0 8 47 1.34
41392--41446 22 2.4 21 80 14 56 41 0 9 49 1.34
46266--46295 15 2.0 15 100 0 60 26 6 6 60 1.47
58334--58365 16 2.0 16 93 0 55 25 21 15 37 1.93
62352--62384 17 1.9 17 100 0 66 27 30 12 30 1.92
62880--62911 15 2.1 15 94 0 55 53 12 15 18 1.73
75454--75482 14 2.1 14 100 0 58 55 6 0 37 1.27
78054--78100 24 2.0 24 82 0 58 29 25 12 31 1.93
81161--81193 16 2.1 16 94 0 57 48 0 15 36 1.45
87493--87547 24 2.5 22 85 8 67 14 23 12 49 1.78
87515--87582 21 3.2 21 77 8 75 11 22 10 55 1.65
89899--90049 18 8.4 18 97 0 266 30 7 27 34 1.85
97680--97711 15 2.1 16 94 5 57 31 0 18 50 1.48
97673--97727 10 5.1 11 80 17 62 32 0 18 49 1.48
97700--97734 17 2.0 18 94 5 63 28 0 22 48 1.51
105668--105730 31 2.0 31 93 0 108 42 20 9 26 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
121101--121159 29 2.0 29 100 0 118 40 13 23 22 1.89
128301--128363 31 2.0 31 93 0 108 26 9 20 42 1.83
136297--136331 17 2.0 18 94 5 63 48 22 0 28 1.51
136320--136351 15 2.1 16 94 5 57 50 18 0 31 1.48
143982--144132 18 8.4 18 97 0 266 34 27 7 30 1.85
146467--146520 21 2.6 21 82 11 74 59 11 20 9 1.59
146449--146538 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!