NC_039675.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_039675.1 Stemona japonica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154224
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4941--4973 13 2.4 14 95 5 59 48 0 0 51 1.00
7547--7577 15 2.1 15 100 0 62 38 6 0 54 1.26
8563--8625 29 2.2 28 83 13 76 12 11 9 66 1.44
12921--12954 17 2.0 17 100 0 68 47 0 11 41 1.40
26112--26141 15 2.0 15 100 0 60 20 20 0 60 1.37
26910--26938 2 15.0 2 92 7 51 51 0 0 48 1.00
30228--30262 17 2.1 17 94 0 61 60 8 5 25 1.49
34877--34911 15 2.2 16 90 5 54 48 0 5 45 1.26
46249--46274 12 2.2 12 100 0 52 34 0 0 65 0.93
46867--46916 25 2.0 25 100 0 100 48 16 16 20 1.82
49364--49407 14 3.1 14 90 9 72 65 6 6 20 1.39
50279--50316 19 2.0 19 100 0 76 52 5 21 21 1.66
55720--55753 17 2.0 17 94 0 59 47 5 14 32 1.69
65451--65479 14 2.1 14 100 0 58 44 6 6 41 1.58
66094--66119 11 2.4 11 100 0 52 30 7 7 53 1.57
66115--66144 11 2.9 10 90 9 51 50 0 0 50 1.00
66530--66557 13 2.2 13 100 0 56 46 14 7 32 1.71
70250--70291 21 2.0 21 95 0 75 38 9 11 40 1.75
75383--75414 16 2.0 16 93 0 55 21 15 0 62 1.32
78015--78062 24 2.0 24 91 0 78 29 33 12 25 1.92
80430--80475 24 1.9 24 100 0 92 28 6 8 56 1.54
87799--87888 21 4.1 21 91 4 126 12 26 11 50 1.73
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
90232--90296 15 4.7 15 75 21 79 33 6 21 38 1.78
90232--90320 39 2.3 39 98 0 169 33 7 21 37 1.82
90269--90328 24 2.5 24 91 0 93 33 8 23 35 1.85
110996--111025 15 2.0 15 100 0 60 60 13 0 26 1.34
116603--116645 17 2.5 17 85 11 52 79 2 9 9 1.03
116600--116646 18 2.5 19 83 13 62 78 4 8 8 1.07
118358--118397 20 2.0 20 100 0 80 55 10 10 25 1.64
119615--119664 7 7.4 7 78 17 61 30 0 2 68 1.01
119602--119644 20 2.2 20 82 0 50 32 2 0 65 1.06
119617--119664 13 3.6 13 75 13 53 29 0 2 68 1.01
119630--119675 20 2.3 20 96 0 83 34 0 4 60 1.16
124654--124678 12 2.1 12 100 0 50 24 32 0 44 1.54
124686--124725 13 3.1 13 100 0 80 47 0 15 37 1.45
138256--138304 19 2.5 19 81 18 57 77 2 6 14 1.05
146014--146073 24 2.5 24 91 0 93 35 23 8 33 1.85
146022--146110 39 2.3 39 98 0 169 37 21 7 33 1.82
146046--146110 15 4.7 15 75 21 79 38 21 6 33 1.78
148454--148543 21 4.1 21 91 4 126 50 11 26 12 1.73
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Tables: 1
The End!