NC_039743.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_039743.1 Semiaquilegia adoxoides chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158340
Tables: 1
This is table 1 of 1 ( 46 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2--33 11 2.6 13 80 19 50 46 12 15 25 1.81
13338--13370 15 2.2 15 100 0 66 18 0 6 75 1.00
13343--13378 15 2.4 15 90 0 54 22 0 8 69 1.15
13409--13458 12 4.0 12 80 10 64 48 12 0 40 1.40
13408--13461 26 2.1 26 92 0 90 46 11 0 42 1.39
14179--14214 11 3.1 11 85 14 54 47 27 0 25 1.52
14186--14211 13 2.0 13 100 0 52 46 30 0 23 1.53
14863--14896 15 2.3 15 100 0 68 44 0 11 44 1.40
14921--14961 19 2.2 19 100 0 82 41 21 0 36 1.54
16873--16901 15 1.9 15 100 0 58 27 0 20 51 1.47
27263--27303 21 2.0 21 85 0 55 31 12 26 29 1.92
28822--28857 9 4.0 9 85 0 54 38 0 11 50 1.38
28825--28860 18 2.0 18 100 0 72 44 0 11 44 1.39
29248--29281 16 2.1 16 100 0 68 5 29 17 47 1.71
30480--30535 28 2.0 28 85 0 76 41 5 19 33 1.74
34207--34236 15 2.0 15 100 0 60 40 0 6 53 1.27
38345--38425 28 2.8 28 80 10 92 37 1 6 55 1.33
38345--38421 30 2.6 30 80 11 88 37 1 6 54 1.35
38395--38441 18 2.4 20 79 17 62 34 0 10 55 1.35
38401--38439 18 2.2 18 100 0 78 30 0 10 58 1.31
49579--49634 27 2.1 26 96 3 103 48 14 7 30 1.70
53944--53984 14 3.1 14 82 6 50 65 0 0 34 0.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
53934--53969 19 2.0 18 89 10 56 61 0 0 38 0.96
53941--53988 25 2.0 23 84 8 60 66 0 0 33 0.92
54032--54062 15 2.1 15 100 0 62 25 6 6 61 1.45
54106--54138 16 2.1 16 100 0 66 33 12 0 54 1.37
67307--67338 16 2.0 16 100 0 64 12 25 0 62 1.30
68772--68803 15 2.1 15 100 0 64 25 12 0 62 1.30
78256--78285 15 2.1 14 93 6 51 46 0 0 53 1.00
78326--78404 37 2.2 37 97 2 151 30 22 13 32 1.93
87003--87031 14 2.1 14 100 0 58 51 6 0 41 1.28
92048--92095 21 2.3 21 92 3 80 10 27 10 52 1.68
94437--94501 9 7.2 9 78 0 76 33 4 26 35 1.77
94437--94508 18 4.0 18 100 0 144 33 5 27 33 1.80
102092--102157 30 2.2 30 97 2 125 43 13 10 31 1.78
111557--111685 68 1.9 65 95 4 231 23 34 22 20 1.97
113154--113183 15 2.0 15 93 0 51 36 20 23 20 1.95
116706--116733 12 2.3 12 100 0 56 50 0 10 39 1.37
122808--122836 13 2.2 13 100 0 58 41 0 13 44 1.44
128827--128862 15 2.4 15 90 0 54 33 2 8 55 1.44
132360--132389 15 2.0 15 93 0 51 20 23 20 36 1.95
133858--133986 68 1.9 65 95 4 231 20 22 34 23 1.97
143386--143451 30 2.2 30 97 2 125 31 10 13 43 1.78
151035--151106 18 4.0 18 100 0 144 33 27 5 33 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
151035--151099 9 7.2 9 78 0 76 30 29 6 33 1.82
153448--153495 21 2.3 21 92 3 80 52 10 27 10 1.68
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Tables: 1
The End!