NC_040113.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_040113.1 Croton tiglium voucher PDBK 2014-0242 chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 150021 Tables: 1 2 This is table 1 of 2 ( 124 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 692--728 17 2.2 17 100 0 74 48 5 10 35 1.61 1555--1580 12 2.2 12 100 0 52 84 0 7 7 0.77 9275--9301 12 2.2 12 100 0 54 59 7 0 33 1.25 10805--10829 11 2.3 11 100 0 50 28 8 0 64 1.22 10824--10867 21 2.1 21 100 0 88 40 0 13 45 1.44 11188--11228 12 3.5 12 93 3 66 31 0 12 56 1.36 13884--13921 16 2.3 17 86 9 60 18 15 0 65 1.27 13973--14074 6 17.8 6 69 18 58 45 0 0 53 1.06 13977--14080 15 6.6 15 68 21 52 45 0 0 53 1.06 14123--14168 14 3.2 14 87 3 65 67 0 0 32 0.91 14147--14188 13 3.1 13 89 6 57 76 4 0 19 0.96 14367--14406 16 2.6 15 88 7 62 45 7 25 22 1.78 15086--15110 13 1.9 13 100 0 50 96 0 4 0 0.24 16253--16283 15 2.1 15 100 0 62 67 6 0 25 1.14 16256--16289 15 2.3 15 89 0 50 73 5 0 20 1.04 17659--17688 14 2.1 14 100 0 60 40 0 20 40 1.52 18410--18493 9 9.6 9 71 19 52 34 2 0 63 1.08 18412--18447 15 2.4 15 100 0 72 25 0 0 75 0.81 18415--18473 15 3.7 15 70 25 50 32 0 0 67 0.91 18627--18712 21 4.0 21 68 14 59 31 6 2 59 1.37 18644--18713 13 5.0 13 83 16 95 30 8 1 60 1.35 18666--18728 18 3.8 18 80 20 91 30 9 3 57 1.46 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 18653--18728 31 2.5 31 100 0 152 30 9 2 57 1.43 18723--18761 14 2.7 15 84 11 55 48 0 2 48 1.15 18818--18895 14 5.7 14 73 23 69 66 0 3 29 1.09 20012--20060 10 4.5 11 79 18 50 67 0 2 30 1.02 20032--20071 18 2.2 19 90 4 64 72 0 5 22 1.04 20023--20067 22 2.0 23 91 4 74 73 0 4 22 1.01 20206--20233 13 2.2 13 100 0 56 78 0 0 21 0.75 20288--20314 13 2.1 13 100 0 54 55 0 7 37 1.28 20280--20320 21 1.9 22 85 5 57 58 0 9 31 1.31 20365--20431 35 1.9 34 88 8 100 56 2 13 26 1.51 20427--20462 15 2.3 16 95 4 65 52 5 8 33 1.55 20683--20770 2 44.0 2 78 20 87 46 3 2 47 1.31 20683--20760 14 5.6 14 89 5 115 48 3 2 44 1.34 20865--20895 15 2.1 15 100 0 62 35 6 6 51 1.53 20953--20989 15 2.4 16 95 4 67 56 5 8 29 1.51 23523--23566 22 2.0 22 100 0 88 50 9 22 18 1.75 24122--24177 29 2.0 29 86 10 80 28 5 0 66 1.14 25815--25846 16 2.0 16 100 0 64 56 0 25 18 1.42 26960--26991 16 2.0 16 100 0 64 31 12 0 56 1.37 34162--34196 18 1.9 18 88 0 52 37 20 0 42 1.52 38944--38994 18 2.8 18 100 0 102 45 13 11 29 1.79 39043--39075 16 2.1 16 100 0 66 24 24 6 45 1.75 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 40876--40916 20 2.0 20 100 0 82 31 9 4 53 1.55 40922--40947 13 2.0 13 100 0 52 38 7 0 53 1.30 42477--42524 17 2.9 17 93 3 80 22 14 0 62 1.32 42680--42747 25 2.8 24 75 4 66 30 0 2 66 1.07 42703--42745 7 6.1 7 78 10 52 34 0 0 65 0.93 42675--42745 28 2.5 27 86 11 90 29 0 4 66 1.11 42703--42745 19 2.5 16 82 14 50 34 0 0 65 0.93 43116--43163 12 4.0 12 100 0 96 75 0 16 8 1.04 43116--43167 7 8.3 7 76 23 62 75 0 15 9 1.05 44293--44325 15 2.2 15 94 0 57 57 0 6 36 1.23 44428--44453 13 2.0 13 100 0 52 61 7 7 23 1.49 44431--44482 15 3.6 15 84 5 63 57 7 5 28 1.50 44581--44612 15 2.1 15 100 0 64 31 12 0 56 1.37 45078--45111 17 2.0 17 100 0 68 41 5 0 52 1.25 45081--45126 15 2.9 16 83 9 58 41 4 2 52 1.33 45079--45116 17 2.2 17 90 4 58 44 5 2 47 1.39 45113--45167 17 3.4 17 70 14 62 34 5 3 56 1.40 45255--45294 20 2.0 20 100 0 80 25 10 0 65 1.24 45481--45512 14 2.3 14 100 0 64 21 12 25 40 1.88 45716--45752 18 2.1 18 89 0 56 56 0 2 40 1.13 45990--46025 17 2.1 17 100 0 72 16 16 0 66 1.25 46720--46768 16 3.1 16 88 5 73 65 0 14 20 1.27 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 50777--50810 17 2.1 17 88 5 52 55 8 5 29 1.54 50845--50886 21 2.0 21 90 0 66 45 4 14 35 1.66 50979--51026 20 2.4 20 86 6 62 41 2 0 56 1.11 51042--51094 27 1.9 28 88 3 81 60 0 5 33 1.20 51200--51242 14 2.9 14 82 6 50 41 6 16 34 1.75 51318--51393 12 6.3 12 77 6 64 55 5 13 26 1.59 51386--51415 11 2.7 11 94 0 51 56 0 6 36 1.26 51313--51404 48 1.9 48 91 4 150 53 5 11 29 1.60 51816--51849 17 2.0 17 94 0 59 41 8 8 41 1.67 55538--55566 15 1.9 15 100 0 58 13 27 37 20 1.91 57353--57391 11 3.5 11 80 13 53 17 2 12 66 1.35 57353--57401 22 2.2 23 88 3 73 18 8 12 61 1.55 57584--57616 13 2.6 13 95 4 59 54 9 6 30 1.56 57971--58026 28 2.0 28 100 0 112 21 28 7 42 1.79 58082--58133 8 6.4 8 74 12 52 13 9 1 75 1.14 59840--59872 16 2.1 16 100 0 66 36 24 12 27 1.91 61679--61712 16 2.1 16 94 0 59 17 8 8 64 1.47 65761--65794 11 2.8 12 86 13 52 41 2 8 47 1.50 65842--65883 11 4.0 11 87 12 70 57 0 0 42 0.99 65844--65883 20 2.0 20 100 0 80 60 0 0 40 0.97 66142--66213 18 4.2 19 73 20 61 29 6 0 63 1.20 66168--66241 12 6.2 13 74 13 61 36 4 0 59 1.16 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 66150--66220 18 4.2 18 79 12 80 29 7 0 63 1.21 69731--69760 14 2.1 14 100 0 60 50 26 0 23 1.50 71959--71995 18 2.0 19 94 5 67 10 8 5 75 1.17 72007--72067 28 2.2 28 93 0 104 39 11 11 37 1.78 72583--72607 12 2.1 12 100 0 50 24 8 0 68 1.16 74541--74574 16 2.1 16 100 0 68 44 0 0 55 0.99 81001--81035 17 2.1 17 100 0 70 31 11 11 45 1.76 81177--81217 9 4.8 9 85 8 59 65 12 0 21 1.25 81428--81468 12 3.4 12 100 0 82 31 7 0 60 1.24 81908--81934 13 2.1 13 100 0 54 44 0 7 48 1.31 82787--82835 18 2.6 19 77 9 64 32 10 2 55 1.45 82866--82903 15 2.6 15 87 4 51 44 7 2 44 1.47 83538--83575 19 2.0 19 94 0 67 47 7 7 36 1.62 84089--84134 21 2.2 21 84 7 58 45 6 4 43 1.49 88736--88771 18 2.0 18 100 0 72 44 11 0 44 1.39 93311--93373 13 4.8 13 81 9 74 38 11 3 47 1.55 93338--93384 15 3.3 15 80 17 64 34 10 4 51 1.56 96369--96396 12 2.3 12 100 0 56 60 25 0 14 1.34 97137--97165 14 2.1 14 100 0 58 37 6 0 55 1.27 98765--98794 15 2.0 15 93 0 51 56 0 3 40 1.16 99369--99400 15 2.1 15 100 0 64 0 25 0 75 0.81 99604--99634 15 2.1 15 100 0 62 51 6 12 29 1.65 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 102089--102113 12 2.1 12 100 0 50 48 0 8 44 1.32 106240--106294 21 2.6 21 83 11 76 12 20 12 54 1.70 107346--107370 12 2.1 12 100 0 50 40 28 16 16 1.89 108695--108805 18 6.2 17 84 10 141 34 5 26 34 1.79 108695--108805 36 3.1 36 94 0 195 34 5 26 34 1.79 108695--108805 54 2.1 54 86 10 156 34 5 26 34 1.79 120266--120292 13 2.1 13 100 0 54 22 14 0 62 1.31 121746--121789 14 3.0 15 80 12 56 27 0 9 63 1.24 121746--121844 49 2.0 50 81 11 116 29 1 7 62 1.28 125360--125396 17 2.2 17 95 0 65 24 5 0 70 1.08 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2