NC_040941.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_040941.1 Phytolacca acinosa voucher 14CS9097 (KUN) plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155121
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5668--5699 16 2.0 16 100 0 64 25 18 0 56 1.42
6264--6311 22 2.2 22 75 17 55 33 2 0 64 1.05
6261--6309 8 6.5 8 75 13 50 34 2 0 63 1.06
6485--6514 15 2.0 15 100 0 60 53 20 13 13 1.72
9062--9094 11 3.0 11 100 0 66 9 0 0 90 0.44
9062--9112 23 2.3 22 82 3 57 13 1 1 82 0.85
17656--17691 12 3.0 12 100 0 72 33 0 25 41 1.55
31240--31295 26 2.2 26 86 0 76 37 5 5 51 1.47
46623--46656 15 2.3 15 89 0 50 64 11 0 23 1.26
46737--46770 13 2.6 13 95 0 59 38 0 5 55 1.24
61922--61946 12 2.1 12 100 0 50 44 16 16 24 1.86
65399--65428 15 2.0 15 100 0 60 20 0 0 80 0.72
66469--66496 14 2.0 14 100 0 56 35 0 0 64 0.94
69276--69301 13 2.0 13 100 0 52 46 7 7 38 1.61
72305--72340 18 2.0 18 100 0 72 55 0 5 38 1.23
78832--78857 13 2.0 13 100 0 52 38 7 7 46 1.61
89251--89318 21 3.2 21 82 0 82 11 22 8 57 1.61
91620--91712 18 5.2 18 96 0 168 30 9 25 34 1.88
99476--99513 18 2.1 18 95 0 67 26 5 7 60 1.46
104801--104860 30 2.0 30 100 0 120 46 13 23 16 1.82
107717--107777 31 2.0 31 93 0 104 39 21 9 29 1.85
108296--108321 13 2.0 13 100 0 52 23 38 7 30 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
113507--113537 15 2.1 15 93 0 53 22 3 6 67 1.28
113960--114004 17 2.6 17 96 3 81 42 8 2 46 1.47
129419--129462 21 2.1 21 100 0 88 22 18 9 50 1.75
131958--131983 13 2.0 13 100 0 52 30 7 38 23 1.83
132502--132562 31 2.0 31 93 0 104 29 9 21 39 1.85
140736--140773 18 2.1 18 95 0 67 60 7 5 26 1.46
148537--148629 18 5.2 18 96 0 168 34 25 9 30 1.88
150932--151000 21 3.3 21 83 2 86 56 8 23 11 1.62
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Tables: 1
The End!