NC_041088.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_041088.1 Trichosanthes kirilowii chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157481
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4690--4750 17 3.6 16 83 14 70 59 0 0 40 0.98
4661--4750 15 5.8 15 72 21 62 61 1 2 35 1.16
7612--7667 26 2.2 26 93 0 94 44 7 1 46 1.41
7619--7670 26 2.0 26 100 0 104 46 7 0 46 1.31
9105--9165 16 3.7 16 82 8 77 45 4 4 44 1.46
9110--9165 18 3.2 17 87 5 69 46 5 3 44 1.43
10560--10603 18 2.5 17 85 7 52 56 0 0 43 0.99
15124--15150 12 2.2 12 100 0 54 40 22 0 37 1.54
30103--30138 17 2.1 17 89 0 54 44 2 13 38 1.59
30467--30513 18 2.7 18 83 3 60 42 21 8 27 1.81
34607--34636 15 2.0 15 93 0 51 56 6 23 13 1.60
34630--34674 20 2.2 21 92 4 74 40 11 4 44 1.60
37753--37781 14 2.1 14 100 0 58 27 0 6 65 1.18
38703--38754 13 3.8 13 73 14 50 36 17 15 30 1.91
46525--46556 16 2.0 16 100 0 64 25 6 18 50 1.70
61957--61990 12 3.0 12 91 8 54 61 8 0 29 1.26
67608--67641 14 2.5 14 95 4 61 44 0 5 50 1.26
67659--67683 11 2.3 11 100 0 50 28 0 8 64 1.22
91219--91301 21 3.7 23 75 18 77 13 22 9 54 1.68
91241--91308 21 3.2 21 82 0 82 11 22 7 58 1.57
93667--93723 18 3.2 18 94 0 105 31 5 28 35 1.79
93667--93723 9 6.3 9 72 0 51 31 5 28 35 1.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
109892--109957 32 2.1 32 97 0 123 40 24 9 25 1.84
134003--134068 32 2.1 32 97 0 123 25 9 24 40 1.84
150237--150293 18 3.2 18 94 0 105 35 28 5 31 1.79
150237--150293 9 6.3 9 72 0 51 35 28 5 31 1.79
152653--152741 21 4.1 21 81 5 81 56 8 22 12 1.64
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!